Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0007 ATGACATCGGCTGAGCAGACCGGTGAATCAGCACCGGCGGACTCGCAAAGAGCCATTCCGACGCCGTTTCTGACGAAAACGTATCAGCTCGTGGATGATCCTTCCGTCGATGATCTAATATCGTGGAATAAAGACGGTAACAGTTTCATAGTTTGGCGACCAGCCGAATTCGCTAGAGATTTGCTACCTAAATATTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAACTCAACACCTATGGATTTCGGAAGGTTGTACCTGACCGTTGGGAATTCGCTAATGACGGTTTCCGGCGAGGCCAAAAGGACTTGCTACGTGACATACAACGACGGAAGATATCATCCGTGGCGGCGGCGACAACGGCAACAGCGAATGCAGTGACGGTGGCAGTGGCAGCACCGGCTCTAGCGGTGGTGTCCCCAGCGACTTCAGGCGATGAGCAGGTACTATCTTCAAATTCATCTGCTCTTGCTGCTGCATACAACAGTAATCCAGTACTACACCGCACTACTAGTTGCACCACTGCGCCGGAGCTCTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATACTAATGAGTCAGGAGTTGAGTCAATTGAAGGGTCTGTGTAGTAATGTATTCGCTTTGATGAACAATTATGCTTCCGGTGTTAGCCGCCAACCGGAATCGTCATCCGCGGGGAGGGCGGTGTCTGCACCTGAGAAGACTTTGTTGGAGCTTATTCCTGCTAAGGATCTCACCATGCATGTAGCTGGCGGAGTTGGCGATGCTGCTGCTGGCACACCGTGTGAGAAGGAGGTTCCGAAGTTGTTTGGGGTTTCAATTGGGCTGAAACGACATAGGATAGAGTGTGAGGTTGAAGAAGAGAGAGAGGAAAGGAATCAAAATTCGCAAATGCAATCCTCCTCGCAGGAACCTGATGGTGGGTCTGATATGAAGTCTGGACAACCTGTTGATGGTGATGACTCGGCTGATCAGGAGCCTTGGTTGGAGCTTGGGAAATGA 1011 0.4985 MTSAEQTGESAPADSQRAIPTPFLTKTYQLVDDPSVDDLISWNKDGNSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGQKDLLRDIQRRKISSVAAATTATANAVTVAVAAPALAVVSPATSGDEQVLSSNSSALAAAYNSNPVLHRTTSCTTAPELLEENERLRKENILMSQELSQLKGLCSNVFALMNNYASGVSRQPESSSAGRAVSAPEKTLLELIPAKDLTMHVAGGVGDAAAGTPCEKEVPKLFGVSIGLKRHRIECEVEEEREERNQNSQMQSSSQEPDGGSDMKSGQPVDGDDSADQEPWLELGK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0007 336 MobiDBLite consensus disorder prediction 298 312 - -
Lja2g0007 336 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0007 336 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0007 336 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0007 336 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0007 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 310 IPR027725 -
Lja2g0007 336 SUPERFAMILY "Winged helix" DNA-binding domain 20 112 IPR036390 -
Lja2g0007 336 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0007 336 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja2g0007 336 Gene3D - 15 113 IPR036388 -
Lja2g0007 336 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 6 310 - -
Lja2g0007 336 MobiDBLite consensus disorder prediction 288 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0007 Lja-Chr2 71120 72687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0007 14 336 HSF AT4G11660 50.877 2.89e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja2g0007 HSF_DNA-bind 1.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0007 K09419 - gmx:100791020 387.882