Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0006 ATGCTGGCCCACCTGGACCCAACATTCTCCTCCTTCTTCATTCTACTACGAAAATTTTCTCACAATTCACATTTATTAATAAGTACTAGAGAGATGAGTAGCTCACATGCCCAAGTTAGACGCTCGTGTTGGACAGAGGAAGAGGACAACCTTCTGATTGAGACAGTCAAGAAGCACGATGGAAGGAGCTGGAAGAAAATAGCTACATATCTTCCAGGGCGCACCGACGTTCAATGCATGCATCGCTGGCAAAAGGTTTTAAATCCTGAGCTTGTAAAGGGACCATGGACAAAGGAGGAGGACGATTGCCTCATTGAACTAGTCAGAAAGTATGGTTTGAAGAGATGGTCTGTTGTTGCAAAATTCTTACCAGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCACAATCACCATGATCCAGCTATAACGAAGGTTGCATGGACAGAGGAAGAGGAATCAGTACTTGCTTACTATCACCAAGTACACGGTGGTAAGTGGGCAGAAATTGCAAGGATTCTTCCTGGAAGGACTTGCAATGCTATAAAAAATCACTGGAACTGCTCAATGAAGAAGAAAATGTATGCATCACCTAATGAAACAGTTTCTCTCAATCAGAGTCACTGGTTGGCACACAGTATTGATAACTCATCCACTAAATTGACTCTTCAAAGCACTTCTGGGGTGGAATTTTCCTCTCCAAAGAGCTATTTTAATGGGGAAACTCCTAAGGCCTCAAGACAAGGAGAAAGCAGATTGATTAATTTACCAACAGACTTGTCTTTGAATAATTTTCCGGATATGCTTGCTACAAATTTGTTTTGTTCCCCTCTTGCCACTACTGTTCATTATGAGGCATATGAATCTCCCAAGCGGCAAAAGGTTTATTCTTCAGATGCAGAGTTTACTGTTGTTGATGAATCTGACAGTCCTCAGTGTGAGAAGAAAGACCAAGTTGGAAGTGAAAGCCACAGCAAAATCAGCTCTATGCAAGATACAGGTTGCTCTTATGTTACCCCAAAATCTAAATTCAGTAATTACATGGGTAGCGTCAGCCCGGAATCTGTACTAAGGAGCTTAGCAATGAACTATGAGAACATTCCTTCTATTATAAGGAAAAGAACTCCTAGGAAAGCTTCCACTGCTGACTTAAGTGATAGTGCCAGAACTCTGCATCTGTAG 1182 0.4222 MLAHLDPTFSSFFILLRKFSHNSHLLISTREMSSSHAQVRRSCWTEEEDNLLIETVKKHDGRSWKKIATYLPGRTDVQCMHRWQKVLNPELVKGPWTKEEDDCLIELVRKYGLKRWSVVAKFLPGRIGKQCRERWHNHHDPAITKVAWTEEEESVLAYYHQVHGGKWAEIARILPGRTCNAIKNHWNCSMKKKMYASPNETVSLNQSHWLAHSIDNSSTKLTLQSTSGVEFSSPKSYFNGETPKASRQGESRLINLPTDLSLNNFPDMLATNLFCSPLATTVHYEAYESPKRQKVYSSDAEFTVVDESDSPQCEKKDQVGSESHSKISSMQDTGCSYVTPKSKFSNYMGSVSPESVLRSLAMNYENIPSIIRKRTPRKASTADLSDSARTLHL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0006 393 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Lja2g0006 393 CDD SANT 44 87 IPR001005 -
Lja2g0006 393 MobiDBLite consensus disorder prediction 374 393 - -
Lja2g0006 393 PANTHER TRANSCRIPTION REPRESSOR MYB5 43 252 - -
Lja2g0006 393 SUPERFAMILY Homeodomain-like 35 90 IPR009057 -
Lja2g0006 393 MobiDBLite consensus disorder prediction 308 322 - -
Lja2g0006 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 87 IPR017930 -
Lja2g0006 393 CDD SANT 95 138 IPR001005 -
Lja2g0006 393 SMART sant 40 89 IPR001005 -
Lja2g0006 393 SMART sant 92 141 IPR001005 -
Lja2g0006 393 SMART sant 144 192 IPR001005 -
Lja2g0006 393 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Lja2g0006 393 MobiDBLite consensus disorder prediction 308 332 - -
Lja2g0006 393 CDD SANT 147 187 IPR001005 -
Lja2g0006 393 Gene3D - 93 144 - -
Lja2g0006 393 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Lja2g0006 393 Pfam Myb-like DNA-binding domain 145 187 IPR001005 -
Lja2g0006 393 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Lja2g0006 393 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Lja2g0006 393 Gene3D - 38 92 - -
Lja2g0006 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
Lja2g0006 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 194 IPR017930 -
Lja2g0006 393 Gene3D - 147 194 - -
Lja2g0006 393 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
Lja2g0006 393 PANTHER MYB PROTEIN-RELATED 43 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0006 Lja-Chr2 65573 69476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0006 25 194 MYB Transcription Factor Family AT5G02320 63.529 1.33e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g0006 Myb_DNA-binding 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0006 - - aprc:113869477 440.269