Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6081 ATGAAAACGAGAATGGAGGAAGAGGAAGAGTTAGAGGAAGATGAAGTGGCATCGTGTTCTTCTGACTCCGATGATCTTGAAGTTGAACAACGGAAATCGCAAAATGTGGAAGCTCTCATCGGGGGCAACCTCATCGTGAAGAGACAATCGTTACTACCGCGAGTTCTTAGGGTAGAGGGAGCGGCCGTTTGCAGAAAACCCTTTAAACCTCCATCCTCTAAACCTTACAATCATCAAGACCTTACGCGTAGGCTTTCTGCTCGCAAAAGGTTTGTCCCATGGCGCTCTTCACCTATTCCTAGACCACCCCTCTTGGAGTTGAATTTGAATTTGAATTTGAATTTGAATCTTGATGTTGCTGAGGATGATGAGCATTTGCCTCCCGAGATTGATCCTCTAGTACTGTGGCACCCTCAGCACTGTGAGGATGGGGCTTCTACTTCCAATTTGACAACAATATCAGTTGTCCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTTGCCGGACTATGTAGCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTTTGGGCAAGACATTGCAGTCTATCACATTACTTTATACTCTTCTTTCTCAAGGGTTCGATGGGAAGCCAATGGTTAGAAAAGCCATCATTGTGACTCCTACTAGCCTTGTCAGCAATTGGGAAGCCGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCGTCTCGTTGCTTTATGTGAAAGCACTAGAGAAGATGTTGTCTCTGGGATTGGCAATTTTACAAGTCCCCGAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACGTTCCGAATGCACTCATCAAAGTTTAGCTCTAGTGGCTCCTGTGACCTCCTCATCTGCGATGAGGCTCACAGACTAAAAAATGATCAGACAATTACAAACCGGGCACTGGCTGCTCTCCCATGCAAACGTAGAGTTTTGCTGTCAGGAACTCCTTTGCAAAACGACTTAGAGGAATTCTTTGCAATGGTTAATTTTACTAATCCAGGAATATTGGGTGACATAGCACATTTTCGACGTTACTATGAGGCTCCAATTATTTGTGGAAGAGAACCTACTGCCACCACAGAAGAGAAGAAGCTAAGTGCTGAACGCACAACTGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTATTATCGAATCACTTACCACCAAAGATAGTTCAAGTTGTTTGCTGCAAGTTGACTCCACTTCAGTCAGACCTATATAAACATTTTCTACAATCCAAAAATGTTAAACGGGCAATTAACGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTATGCAATCATCCAAAGCTCATATATGATACCTTACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGATTGCATTCGATTTTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGATCATGGACGGGTGGGAATGGAGCCTGGGTTGAGCTATCCGGTAAAATGCAAGTCTTAGCAAGATTGCTTGCTCATCTACGCCAGAGAACAAATGATCGCATTGTCCTTGTTTCAAACTATACTCAGACACTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGCACCACATCAATCAGTAAAAGGCAGAAGTTAGTAAACTGCTTTAACGACACATCAAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATCTTATTGGTGGAAATCGACTCGTCTTATTTGATCCTGATTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCTAAAGAAGGGCTGCAAAAGGTCATTCAGCGGGAGCAAACCGATAGCCTTCTAGAACAGGGTAACTTTCTTTCGACAGAGGATCTTCGCGATTTGTTTACTTTTGATGAGAACCTCAAGTCAGAGATTCATGAAAAGATGCGATGCAGTCGGTGCCGAATAATTGATGAGCCGCAAAGCTCTGACGTCCTATCAACAATAGTTAATAGTGAATCTGATGAAGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCAGGCTGTTTAGAGAATTTAAAAGGATCAGAGAAGCAGATTGGGACCCCACTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTCCCCAACTTCTGTACCAGATCCTATCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTGTTTACAAACCAAGTTAACGGAAAGCTGGTACCCATGGAGTCCATAATCAGTCGCCAGCTAGAGCAAAAGGAACCTAATAAGCCAAGGCAGAACATCAAACAAAAATTCACTCCCTTGAAATTAGCATTTAATACTAACCACACTCATGTAAATAATAAAGTATTACCACAGAAAAGATCGTATCCTGATCATGCCAATGGTGATGATCTTGAGTAA 2592 0.4228 MKTRMEEEEELEEDEVASCSSDSDDLEVEQRKSQNVEALIGGNLIVKRQSLLPRVLRVEGAAVCRKPFKPPSSKPYNHQDLTRRLSARKRFVPWRSSPIPRPPLLELNLNLNLNLNLDVAEDDEHLPPEIDPLVLWHPQHCEDGASTSNLTTISVVPLLVRFLRPHQREGVQFMFDCVAGLCSTPNIHGCILADDMGLGKTLQSITLLYTLLSQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTREDVVSGIGNFTSPRSNLQVLIVSYETFRMHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPTATTEEKKLSAERTTELSAKVNQFILRRTNALLSNHLPPKIVQVVCCKLTPLQSDLYKHFLQSKNVKRAINEELKQSKILAYITALKKLCNHPKLIYDTLRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGNGAWVELSGKMQVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGTTSISKRQKLVNCFNDTSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQTDSLLEQGNFLSTEDLRDLFTFDENLKSEIHEKMRCSRCRIIDEPQSSDVLSTIVNSESDEETSDIGGFAEIAGCLENLKGSEKQIGTPLEEDLSSWGHHFSPTSVPDPILQASAGDEVTFVFTNQVNGKLVPMESIISRQLEQKEPNKPRQNIKQKFTPLKLAFNTNHTHVNNKVLPQKRSYPDHANGDDLE* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6081 863 CDD SF2_C_SNF 515 643 - -
Lja1g6081 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 404 IPR027417 -
Lja1g6081 863 PANTHER SNF2/RAD54 FAMILY MEMBER 8 804 - -
Lja1g6081 863 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 354 IPR014001 -
Lja1g6081 863 Pfam SNF2-related domain 166 472 IPR000330 GO:0005524|GO:0140658
Lja1g6081 863 CDD DEXHc_RAD54 163 404 - -
Lja1g6081 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 796 IPR027417 -
Lja1g6081 863 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g6081 863 MobiDBLite consensus disorder prediction 8 22 - -
Lja1g6081 863 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 679 IPR001650 -
Lja1g6081 863 Gene3D - 426 695 - -
Lja1g6081 863 Gene3D - 404 710 IPR027417 -
Lja1g6081 863 SMART helicmild6 548 632 IPR001650 -
Lja1g6081 863 SMART ultradead3 159 362 IPR014001 -
Lja1g6081 863 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 8 804 - -
Lja1g6081 863 Gene3D - 137 403 IPR038718 -
Lja1g6081 863 Pfam Helicase conserved C-terminal domain 522 631 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6081 Lja-Chr1 111666045 111676467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6081 189 652 RAD5 or RAD16-like Gene Family AT3G16600 24.812 9.55e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g6081 SNF2_N 3.5e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6081 K10875 - gmx:100781631 1387.47