Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6063 ATGGGGCACTCCAATGTCTGGAACTCTCACCCCAAGACCTATGGACCTGGTTCCCGCGCCTGCCGTGTGTGTGGGAACCCTCATGCAATTATCCACAAGTATGGGCTTATGTGTTGCAGGCAGTGCTTCCGCAGCAATGCCAAGGAAATTGGATTCATTAAGTATCGCTGA 171 0.5205 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIHKYGLMCCRQCFRSNAKEIGFIKYR* 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6063 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 IPR039744 GO:0003735|GO:0008270
Lja1g6063 56 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 49 - -
Lja1g6063 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
Lja1g6063 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Lja1g6063 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6063 Lja-Chr1 111536228 111536736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6063 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 87.500 5.34e-33 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6063 K02980 - tcc:18608068 127.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6063 1 111536228 111536736 Lja5g0437 5 3806857 3808470 PCT