Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6062 ATGAGCTGCAACGGTTGTCGTGTCCTACGAAAAGGTTGCAGCGGGGAGGAGTGCTTGCTGAGGAATTGCCTTCAATGGATAGACAACCCACAAGCTCAAGGTCACGCAACTCTGTTTGTGGCCAAGTTCTTTGGTCGTGCCACTCTCATGTCTTTTCTTTCCTCCGTACCCACCAACCAAACACCTGGTTTGTTCCGGTCTCTTCTGTATGAAGCAGTGGGACGTGTGGTGAATCCTGTTACCGGAGCAGTGGGGCTACTCTGGACTGGTAACTGGCACCTCTGTCAGTTGGGGGTTGACCAAGTTCTTCGATCTGGTGCTGCTGCTGCTGCTGCTTTCACTCCTCCTCCTCAGCTGCCATCACTTGAAGCTGCTGCAACTAGCTCGTGTCACCAACAACCGCCGCAAATACCTTCCCACCAATCCACCTTCCCTGCAACGTCTACCAACCCCTTTACACTATTCTTCTGA 471 0.5265 MSCNGCRVLRKGCSGEECLLRNCLQWIDNPQAQGHATLFVAKFFGRATLMSFLSSVPTNQTPGLFRSLLYEAVGRVVNPVTGAVGLLWTGNWHLCQLGVDQVLRSGAAAAAAFTPPPQLPSLEAAATSSCHQQPPQIPSHQSTFPATSTNPFTLFF* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6062 156 MobiDBLite consensus disorder prediction 124 146 - -
Lja1g6062 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 134 - -
Lja1g6062 156 PANTHER LOB DOMAIN PROTEIN 1 134 - -
Lja1g6062 156 ProSiteProfiles LOB domain profile. 1 108 IPR004883 -
Lja1g6062 156 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6062 Lja-Chr1 111530706 111531590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6062 1 119 AS2 family AT3G49940 68.908 2.46e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g6062 LOB 3.6e-22 No_clan