Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6061 ATGACGACGACAACACCAGTGGTTGCCGGCCGGGAACTCTCAAACCCACCCTCCGACGGCATCTCCAACCTTCGTTTCTCCAATCACACCGATCTCCTTCTCGTCTCTTCTTGGGACAAGACCGTGCGGTTGTACGATGCCAGCGCTAATGTGCTCAGAGGAGAGTTCATACACGGCGGACCCGTCCTTGACTGTTGCTTCCACGACGACTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTCAGGCGACTCGTTTTCAACACTAGCCAGGAGGATATTTTGGGAAAACATGATGCTCCCGTTCGTTGTGTCGAGTACTCCTATGCAGCAGGACAATTGATCACTGGTAGTTGGGACAAAACCCTAAAATGTTGGGATCCTAGAGGTGCAAGTGGTCAAGAGCGCACTCTTGTTGGGACATATCCACAACCTGAGCGTGTGTACTCTCTATCTCTTGTTGGAAATAGGCTTGTTGTAGCAACAGCTGGAAGACATGTTAATGTTTATGATTTGAGGAACATGTCTCTGCCTGAGCAACGAAGGGAATCTTCTCTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCTCTTAGTTCTGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTCTCTGAGGCTAGCCAAGCAAAGAAGTATGCTTTTAAGTGTCACAGAAAGTCGGAAGCTGGAAGGGACTTCGTCTATCCTGTAAATGCCATGGCATTCCACCCCATATATGGTACGTTTGCAACTGGAGGTTGTGATGGTTATGTTAATGTGTGGGACGGAAACAACAAGAAAAGGCTATACCAGTATTCAAAATATCCAACTAGCATTGCTGCACTTTCATTCAGTCGAGATGGACGCCTCCTGGCTGTTGCATCAAGTTACACATTTGAAGAGGGGCCTAAACCCCATGAAAAAGATGCTATCTATGTTCGCAGTGTAAATGAGATAGAGGTCAAGCCAAAACCCAAAGTCTATCCTAATCCTGCCGCGTAA 1026 0.4786 MTTTTPVVAGRELSNPPSDGISNLRFSNHTDLLLVSSWDKTVRLYDASANVLRGEFIHGGPVLDCCFHDDSSGFSVAADNTVRRLVFNTSQEDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSLPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDFVYPVNAMAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKPHEKDAIYVRSVNEIEVKPKPKVYPNPAA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6061 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Lja1g6061 341 Gene3D - 4 335 IPR015943 GO:0005515
Lja1g6061 341 PANTHER MRNA EXPORT FACTOR AND BUB3 9 336 - -
Lja1g6061 341 SMART WD40_4 222 270 IPR001680 GO:0005515
Lja1g6061 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Lja1g6061 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Lja1g6061 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Lja1g6061 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Lja1g6061 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Lja1g6061 341 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 9 336 - -
Lja1g6061 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Lja1g6061 341 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Lja1g6061 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Lja1g6061 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Lja1g6061 341 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515
Lja1g6061 341 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Lja1g6061 341 PRINTS G protein beta WD-40 repeat signature 257 271 IPR020472 -
Lja1g6061 341 PRINTS G protein beta WD-40 repeat signature 114 128 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6061 Lja-Chr1 111524353 111527798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6061 75 303 U-box Gene Family AT2G33340 24.686 5.99e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6061 K02180 - csv:101212434 657.907