Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6060 ATGGAGTCTGCTGTGCATATTTCTGAAGAATGGAGTTCTCTTAGTGGGGCTTACACGGCTGAGGAAGCTGACTTTATGCACCAGTTGCTTGGTAACTGTGCAGTCCCACAGCAGTTCTATGAACCTGCAAATACTAATTATATGTGTTTTTTGCAAGGGAGTAGTAGCTCAAGTGCTGATAATAATAATATCTTTCCCACTACAAGTGGTGTCAACTGCACCAATAGTTCAGTTACAAATTTTGGCTATATGCCAATGTGTTTTTCAGCCGGCGATTCCAAATTCAGCCCACATAGAGTACAAGGGAATGACAGCAAACATCTAAATGAAAACATTGATGACGAGTTAGGCCAAGACACAGGGACAGTGGTTCTTGCTGACAAGAATTTGCAAACACACAAGAAACGTGAAATACTAGTTTCTGAACCAGAAGAGGATAAAATCAGAAGCCGGCCAAAATCAGGAAAAAGATGTAGGAGCTCAAATGAGGTCCCAAAGAACAATAGGAATGTTAAATCTAAGAAGAATACAAGGTCTGCTTCTATAAGTACTGAAGAGGATATAAGTCCTGGTCCTCAGGATCAGACTTGCTGCTCAGATGATGACTCCAATGCTTCTCTGGAGCAACGCGGAGGGTCATCTTCAAGTTTGAGTCTGAATGATTCTTCAGCTATGAAGTTAAGTAGCAAATCAACATCTAGTAGAGGTCCTGCTACTGATCCACAGAGCGTCTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGCTAAGAATCCTACAAAGCCTTGTCCCCAATGGAACTAAGGTAGATATCAGCACCATGCTTGAGGAAGCTGTCCAATACGTGAAGTTTTTACAGCTTCAAATTAAACTTCTAAGCTCTGACGATATGTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGACTGGAACTTAACCTCCCCCTAATCAAAGAATCAAAGGATATGCATATCATTGCAGCAAACAAGTCTCCAGCAGTTTAA 1014 0.4112 MESAVHISEEWSSLSGAYTAEEADFMHQLLGNCAVPQQFYEPANTNYMCFLQGSSSSSADNNNIFPTTSGVNCTNSSVTNFGYMPMCFSAGDSKFSPHRVQGNDSKHLNENIDDELGQDTGTVVLADKNLQTHKKREILVSEPEEDKIRSRPKSGKRCRSSNEVPKNNRNVKSKKNTRSASISTEEDISPGPQDQTCCSDDDSNASLEQRGGSSSSLSLNDSSAMKLSSKSTSSRGPATDPQSVYARRRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGMNIGLELNLPLIKESKDMHIIAANKSPAV* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6060 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 303 IPR036638 GO:0046983
Lja1g6060 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 317 - -
Lja1g6060 337 MobiDBLite consensus disorder prediction 141 163 - -
Lja1g6060 337 PANTHER TRANSCRIPTION FACTOR BHLH54 38 317 - -
Lja1g6060 337 SMART finulus 243 292 IPR011598 GO:0046983
Lja1g6060 337 Pfam Helix-loop-helix DNA-binding domain 247 287 IPR011598 GO:0046983
Lja1g6060 337 Gene3D - 243 295 IPR036638 GO:0046983
Lja1g6060 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Lja1g6060 337 MobiDBLite consensus disorder prediction 174 240 - -
Lja1g6060 337 MobiDBLite consensus disorder prediction 141 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6060 Lja-Chr1 111518526 111519968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6060 10 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.057 1.62e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g6060 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6060 - - gmx:100817334 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6060 1 111518526 111519968 Lja5g0444 5 3902545 3908332 PCT