Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6054 ATGAGGGGGAACGGGAATGGCAACAACGATGAGAGGTGGGTTCGGAAGAAGGCCACTGGGGTCAGGGCATGGCTCCTTCTTCAAGCAAACGGCGACACGGAGGTCGTTGAGGCCGGGAAGCACGCTATCATGCGCCGCACTGGTCTTCCTGCACGTGACCTGCGTATCCTGGACCCTCTCCTTTCGTACCCATCCACCGTTCTCGGCAGAGAGAGAGCCATCGTCATCAACTTGGAACACATCAAAGCCATCATCATCGCTCATGAGGTTCTCCTTCTCAATTCCAGAGACCCCTCCGTCACCCCTTTCGTCGACGAACTCCGCGCCAGGATCCTCCGTCATCGCCACGCTACCACCTCCAACCCTAAACTCGAGATGGACAATCCTGAAGATGGCGGCATGAAGATTCTCCCCTTCGAATTTGTCGCACTCGAGGCTTGCCTTGAGGCTGCTTGCAGTGTCTTAGAAAACGAGGCAAAGACGCTCGAGCAGGAGGCTCATCCCGCTCTCGATAAGCTCACTTCCAAGATCAGTACTCTCAATCTGGAACGCGTTCGTCAAATCAAGAGCCGTTTGGTTGCCATCACTGGTCGTGTTCAAAAGGTAAGGGATGAATTGGAACACTTGCTCGATGATGATGAAGATATGGCCGAGATGTATCTCACCGACAAGCTAGTTCAGCAGCAGTTCGAAACTTCTTCTGCTGAAGAAGATCATGATGGGGACGCCATGGATAATCTTCTTCAACCAGATATAGATGAGGACGGGACACATCCTGAAATATCATTGGAACCTGGTGGAGCCAATACAAGTGATGAAGATCATCAAAATGCTCAACATCCTTCTAGTTTACTTAGAAGGGATAGCCGCGCTAGCACTACCTACAGTGCCACCACCAAGCAACTTGATGTGGAGGAGCTTGAGATGCTCTTGGAAGCTTATTTTGTGCAGATTGACGGCACTCTCAACAAGCTATCTACGCTGAGGGAGTACGTTGATGACACGGAGGATTACATCAACATTATGCTGGATGACAAACAGAACCATCTCCTACAAATGGGAGTCATGTTGACCACAGCAACTCTGGTTGTAAGTGCGTTTGTTGTTGTGGCTGGTATTTTCGGTATGAATATTAAAATTGAGCTGTTTAATCCCGATATAGCTGGAATGAGAGAGTTCCTCTGGACTGTTGGTGGCAGCACTGCTGGAACCATATTCTTGTATGTGGTTGCCATTGCCTGGTGCAAGCACAAGCGCTTGCTGGAGTAA 1269 0.4996 MRGNGNGNNDERWVRKKATGVRAWLLLQANGDTEVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIIIAHEVLLLNSRDPSVTPFVDELRARILRHRHATTSNPKLEMDNPEDGGMKILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTDKLVQQQFETSSAEEDHDGDAMDNLLQPDIDEDGTHPEISLEPGGANTSDEDHQNAQHPSSLLRRDSRASTTYSATTKQLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELFNPDIAGMREFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6054 422 Gene3D - 10 95 - -
Lja1g6054 422 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 131 421 IPR039204 -
Lja1g6054 422 MobiDBLite consensus disorder prediction 233 260 - -
Lja1g6054 422 MobiDBLite consensus disorder prediction 230 292 - -
Lja1g6054 422 PANTHER - 131 421 - -
Lja1g6054 422 PANTHER - 14 121 - -
Lja1g6054 422 Pfam CorA-like Mg2+ transporter protein 305 408 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lja1g6054 422 MobiDBLite consensus disorder prediction 269 292 - -
Lja1g6054 422 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 14 121 IPR039204 -
Lja1g6054 422 Coils Coil 145 165 - -
Lja1g6054 422 Gene3D Magnesium transport protein CorA, transmembrane region 99 350 - -
Lja1g6054 422 CDD Mrs2_Mfm1p-like 24 420 IPR039204 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6054 Lja-Chr1 111475200 111477817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6054 24 422 MRS2 Gene Family AT3G19640 64.172 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6054 - - adu:107488664 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6054 1 111475200 111477817 Lja4g3497 4 65866373 65874061 PCT