Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6050 ATGAGTAAAAAGTCAACCTCTGGTCGTCAAAGAATTCCAATTGAAAAAATAGCAAAAAAAAGTCATTTACAAGTTACATTTTCTAAACGGCGTTCAGGACTTTTCAAAAAAGCTAGCGAACTTTGCACACTGTGTGGTGTGGAAATTGCAATAATCGTTTTTTCTCCAGCTGACAAAGCATTTTCTTTTGGCCACCCAGGAGTTGAATCCTTAATCGATTGCTATTTCGCTCAAAACTCTCCTTCAGAGCTTAGTAGTAGCCACCAACTTGTTGAGGCTCATCGCAATGCGAATGCTCGTAATCTCAACATGCAACTCACTCAAATTCTGAATCAATTGGAGATTGAGAAAAAATATGGTGATGAGTTAGACCAAGCACGCAAAGCTAGGCAGAGGCAATTCTGGTGGGAGACACCCATTGATGAGCTTGGATTGTATGAGTTACAACATTTAATGCTTTCAATGGAGGAACTAAAGAAGAATGTTGGGAAATTTGGTAGCAAGATGATGTTGATGGAGCAAAGCTCACAAATTAACAAACCTGCCCCTGAGATTTATGCTAGTTCATCCACTGTTGCTAATGCATCTAATCTGTGTTTTCTTGCCAACAGAACACTAGATTGTTTATTCCAATTTTCTTTCTTATTCACATCCTATTACTATCCTAATAACCAAATTACAAATCCTTCATCTTCTTTCCCAGCATAA 708 0.3799 MSKKSTSGRQRIPIEKIAKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPGVESLIDCYFAQNSPSELSSSHQLVEAHRNANARNLNMQLTQILNQLEIEKKYGDELDQARKARQRQFWWETPIDELGLYELQHLMLSMEELKKNVGKFGSKMMLMEQSSQINKPAPEIYASSSTVANASNLCFLANRTLDCLFQFSFLFTSYYYPNNQITNPSSSFPA* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6050 235 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lja1g6050 235 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lja1g6050 235 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lja1g6050 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Lja1g6050 235 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Lja1g6050 235 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Lja1g6050 235 SUPERFAMILY SRF-like 8 93 IPR036879 GO:0003677|GO:0046983
Lja1g6050 235 Coils Coil 96 116 - -
Lja1g6050 235 Gene3D - 88 191 - -
Lja1g6050 235 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lja1g6050 235 PANTHER MADS BOX PROTEIN 6 180 - -
Lja1g6050 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 6 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6050 Lja-Chr1 111385942 111387946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6050 8 162 Type I MADS-box Gene Family AT2G24840 55.696 1.43e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g6050 SRF-TF 1.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6050 - - lja:Lj1g3v0052270.1 281.952