Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6046 ATGGCTTCGCTCCTTTCACTGTTTATCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCACTGAAGCACAAGACACTCCCGTTTATCTTTACAAAAACTGCTCAACCAACACCACCACCACCAACAGCGCCTACCACCTCCACCTCAGAACCCTCCTCAACTCCCTCTCCTCCAACGCCACCGAATTCCACAACTCCACCGTTGCCGGAACCTCCCCCTCCGACACCGCCTACGGACTCTTCATGTGCCGCGGCGACGTCGACCCCGCCATTTGCCACCAGTGCGTCGTCAACGCCACACACCGCCTGCAAACTGAGTGCTCCCTCTCCAACCAGGCGATCATATGGTACGACGAGTGCACTGTTCGCTACTCCAACCGCTCCTTCTTCTCCACGGTCGATACCAGACCCCGCCTTGGCCTCCTCAACACCGCCAACATCTCCAACCAGGAAACCTTCATGCGGTTGCTCTTCCGAACCATGAACTCAACCGCTGACGCTGCTTCGAAATCTTCAATCGGTGAGAAGAAGTACGCGACGATGCAAGCCAACATCTCAGGGTTTCAGTCGCTGTACTGTTTGGCGCAGTGCACGCCGGATCTCTCGCCGTCGGATTGCAGAAGGTGCCTCACCGGTGTGATTGGAGATCTTCCATGGTGCTGTCAGGGGAAGCAGGGTGGAAGGGTTCTCTATCCCAGCTGTAATATCAGGTATGAGCTTTATCCTTTCTATCGCACCACTGCTTCCTCGCCACCGCCGCAGCCTCTTCTTCTTCCTCCCATCACAACTCCAGCAAATTCGGAAGGAAGCAGTGGCATCTCAGCAGGGACTATTGTTGCAATTGTGGTTCCAATTACAGTGGCTGTGCTTCTATTCATCCTTGGTTATTGTTTCTTGATTAAAAGAGCAAAGAAGAAGCGTGATTCTGTACATCAAGGAAAGACTGCATCTGATATCACCAATGTGGAGTCCTTGCAATTCGATTTCGGCACAATTGAAGCCGCCACAAACAATTTCTCTGCAGATAATAGACTGGGTGAAGGTGGATTTGGTGAGGTTTTCAAGGGCACTCTTACAAGTGGAAAAGAAATAGCTGTTAAGAGACTCTCCAAAAGCTCTGGACAAGGTGCAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTTCAACACAGAAATTTGGCCAGGCTTCTTGGATTTTGCTTGCAAGGAGAAGAAAAGATACTTGTTTATGAATATGTGGCCAACAAAAGTCTTGACTACATCCTTTTCGATCCTGAAAAGCAAAGGCAGTTGGATTGGTCAAGACGTTACAAGATTATTAAAGGGATCGCTCGAGGCATTCTATATCTTCATGAAGATTCCAGGCTTAGAATTATACATCGTGATCTCAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTCGGAGTTGATCAAACTCAAGGGAACACCAGCAGAATTGTAGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGATGTATACAGTTTCGGAGTCCTCCTTATGGAGATCATAAGTGGCAAGAAGAATAGCTCTTTCTATCAAACAGAAGGTGCTGAGGATCTATTGAGCTATGCATGGAATCTTTGGAAGAATGGAGCACCTTTGGAACTGATGGATCCTGTTTTAAGGGAATCTCATGCTCCAAACGAAGTTATGAGAAGCATCCATATTGGTTTGCTCTGTGTCCAAGAAGATCCAGCTGACAGACCCACGATGGCAAGCATAGTTCTTATGCTAGACAGTAACACTGTTACTCTTCCAACTCCAAAGCAGCCTGCATTTTTCGTTCATAGTGGAACTGATTCAAACATGCAAAAGGAGCTTCAGTTAGATCAATCTACAACAAAGTCAATAACAATGTCTGTGAATGAGATGTCAATAAGTGAAATGGACCCTCGATAA 1995 0.4667 MASLLSLFITFFFFFFFFFTTEAQDTPVYLYKNCSTNTTTTNSAYHLHLRTLLNSLSSNATEFHNSTVAGTSPSDTAYGLFMCRGDVDPAICHQCVVNATHRLQTECSLSNQAIIWYDECTVRYSNRSFFSTVDTRPRLGLLNTANISNQETFMRLLFRTMNSTADAASKSSIGEKKYATMQANISGFQSLYCLAQCTPDLSPSDCRRCLTGVIGDLPWCCQGKQGGRVLYPSCNIRYELYPFYRTTASSPPPQPLLLPPITTPANSEGSSGISAGTIVAIVVPITVAVLLFILGYCFLIKRAKKKRDSVHQGKTASDITNVESLQFDFGTIEAATNNFSADNRLGEGGFGEVFKGTLTSGKEIAVKRLSKSSGQGAEEFKNEVVVVAKLQHRNLARLLGFCLQGEEKILVYEYVANKSLDYILFDPEKQRQLDWSRRYKIIKGIARGILYLHEDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTEGAEDLLSYAWNLWKNGAPLELMDPVLRESHAPNEVMRSIHIGLLCVQEDPADRPTMASIVLMLDSNTVTLPTPKQPAFFVHSGTDSNMQKELQLDQSTTKSITMSVNEMSISEMDPR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6046 664 SMART serkin_6 339 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g6046 664 Gene3D Transferase(Phosphotransferase) domain 1 415 619 - -
Lja1g6046 664 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 662 - -
Lja1g6046 664 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 662 - -
Lja1g6046 664 Pfam Domain of unknown function (DUF3403) 612 664 IPR021820 GO:0004674
Lja1g6046 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Lja1g6046 664 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g6046 664 Pfam Protein tyrosine and serine/threonine kinase 341 608 IPR001245 GO:0004672|GO:0006468
Lja1g6046 664 Gene3D Phosphorylase Kinase; domain 1 300 414 - -
Lja1g6046 664 Pfam Salt stress response/antifungal 146 241 IPR002902 -
Lja1g6046 664 Pfam Salt stress response/antifungal 34 126 IPR002902 -
Lja1g6046 664 SUPERFAMILY Protein kinase-like (PK-like) 324 632 IPR011009 -
Lja1g6046 664 CDD STKc_IRAK 345 611 - -
Lja1g6046 664 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Lja1g6046 664 ProSiteProfiles Gnk2-homologous domain profile. 135 243 IPR002902 -
Lja1g6046 664 Gene3D - 138 243 IPR038408 -
Lja1g6046 664 Gene3D - 26 129 IPR038408 -
Lja1g6046 664 ProSiteProfiles Gnk2-homologous domain profile. 27 129 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6046 Lja-Chr1 111365492 111368441 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6046 1 664 Receptor kinase-like Gene Family AT4G05200 52.993 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g6046 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6046 - - vun:114173511 1023.46