Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6044 ATGAACAGAGATACACCTTCAGCTAAGCTTTCGCTAATCATTTTCATGTTACTTATCCATAAAATTTCTGGAGCAGACCCTGTTGATACTTATTGTCCAAATGAATTCCCATTTTACACTCCCAACAGTTCATTCCACAAGAACCTTAAGCTTCTCATGGAATCGCTATCCTCCAATACCGCTTCAAAGACAGGTTTCTACAATACATCTGTCGGAGAAGGACGAGACAAAGTGTATGGACAAGCACTCTGCAGAGGAGACATCACAAACTCCACAATGGTTTGCCAGCAATGCATTCAGAAAGCAAGCCAAGATATCATGAACAGGTGCAGCAGTGAAGATGCAATGATATGGTATGAGTTTTGCCAAGTTCGGTACTCCTTTCAGATGTTTTTCTCACGCTCAGTTTATACTGGAAAATATCCACAGCAGAATGATCAGGAGAAGAATGTCTCAGATCCTATTCGATTTGAACAACACGTGACTTATTTAATGAACAATCTCTCAGATGAAGCTGCTTTTAATCCTGCCAAAAACATGTTTGCAGCTGGGGAAATTAGGTCTCCAGGGAAAAGGACAATAGTTTATGGGCTTGTCCAATGTACCAGGGACATGTCTGGAACAGACTGCAGTAGTTGTTTAAGTTCTGCATTAACAGAACTTACAACATGCTGCTCGAGAAGAGAAGGAGGGATTATTGTCAGTAGAAATTGCAATGTTAGGTTTGATTTGTCCAAGTTCTTCAACACTTCATCAGCATACTTGTTGACTTATCCAACATCCAAAGGAGGAGGGAAATGGAAGCCCTGGATGTTTGTGTTGACTATATGTGGCTCAATTTTAATATTAGCAGTTGTTGTTGGGTTGTGCACTGCTTGCCTCAGGAGAAGAAATGATAGAGACAGAGATGAAGAAAAGAGTGAAAGGATGATATTGCAAGATTTAGTTAGCCCCAGACATGTAGCAATTACCCAAGAAGGTGAGTTGATTAGTTCTGATGAAATGTTGTTCATGACCTTAGCAACCATTAAAGCAGCTACTGGTGACTTTTCTGATAGAAATAAGCTGGGACAAGGAGGGTTTGGTGAAGTATACAAGGGTGTTCTGTCAGATGGTAATGAAATTGCAGTAAAAAGATTATCAAGGAAGTCTTGGCAAGGCATGGAGGAATTCAAAAATGAGATCATGCTCATTGCCAAACTTCAACACAGGAATCTGGTGAGGCTGTTGGGTTGTGTCTTGGAGGGAGACGAAAGAATGCTTGTATATGAGTTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGATGCAGGAAAACGTCCCAGACTTGATTGGAAAACATGCCAAGGTATTATCAATGGCATAGCCAGAGGACTAGTTTATCTTCACGAGGAGTCTCGCCTTAAAATCATTCACCGAGACCTAAAGCCAAATAATGTGTTGCTAGATCATGAACTGGTTGCTAAAATATCAGATTTTGGCATGGCCAGGATATTTTCTGAGAATCAGAATGCAGCTAATACCAAAAGAGTTGTGGGAACATATGGATATATGGCTCCAGAGTATGCAATGGAGGGATTGTTCTCTGTAAAATCTGATGTCTTCAGCTTTGGTGTTATCTTGCTTGAAATCATTAGTGGGAAAAGAAATAACGGCTTTTACTTAACCGAACTTGCCCCAACACTTCTTGCACATGCGTGGCAGCTGTGGAATGAAGGAAAAGAATCGGAATTTGTGGATCCCTTGTTACGGGAATCATGTCTTGCTTCTGAACCTGAAGTTCTGAGGTGCGTGCACATTGGACTTCTGTGCGTGCAGCAAGATCCAGAAGACAGACCCACCATGTCAGATGTGGTGGCTCTCCTGGGAAGTGAATCAACGGTTCTTCCCCAACCAAGCAAACCATCTTTTCCTTTGCGTAGGGTGCATCATGTAGATCCATCAGCATCAACAAATCCTTCAGTGAGTGAGATGATGTGGTCTAGTGTTTTGCCACGATGA 2004 0.4152 MNRDTPSAKLSLIIFMLLIHKISGADPVDTYCPNEFPFYTPNSSFHKNLKLLMESLSSNTASKTGFYNTSVGEGRDKVYGQALCRGDITNSTMVCQQCIQKASQDIMNRCSSEDAMIWYEFCQVRYSFQMFFSRSVYTGKYPQQNDQEKNVSDPIRFEQHVTYLMNNLSDEAAFNPAKNMFAAGEIRSPGKRTIVYGLVQCTRDMSGTDCSSCLSSALTELTTCCSRREGGIIVSRNCNVRFDLSKFFNTSSAYLLTYPTSKGGGKWKPWMFVLTICGSILILAVVVGLCTACLRRRNDRDRDEEKSERMILQDLVSPRHVAITQEGELISSDEMLFMTLATIKAATGDFSDRNKLGQGGFGEVYKGVLSDGNEIAVKRLSRKSWQGMEEFKNEIMLIAKLQHRNLVRLLGCVLEGDERMLVYEFMSNKSLDQFIFDAGKRPRLDWKTCQGIINGIARGLVYLHEESRLKIIHRDLKPNNVLLDHELVAKISDFGMARIFSENQNAANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVILLEIISGKRNNGFYLTELAPTLLAHAWQLWNEGKESEFVDPLLRESCLASEPEVLRCVHIGLLCVQQDPEDRPTMSDVVALLGSESTVLPQPSKPSFPLRRVHHVDPSASTNPSVSEMMWSSVLPR* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6044 667 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 665 - -
Lja1g6044 667 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Lja1g6044 667 SMART serkin_6 350 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g6044 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Lja1g6044 667 Gene3D - 28 131 IPR038408 -
Lja1g6044 667 Gene3D - 140 247 IPR038408 -
Lja1g6044 667 SUPERFAMILY Protein kinase-like (PK-like) 331 623 IPR011009 -
Lja1g6044 667 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 665 - -
Lja1g6044 667 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Lja1g6044 667 Gene3D Transferase(Phosphotransferase) domain 1 426 630 - -
Lja1g6044 667 Pfam Salt stress response/antifungal 149 243 IPR002902 -
Lja1g6044 667 Pfam Salt stress response/antifungal 37 128 IPR002902 -
Lja1g6044 667 Pfam Protein tyrosine and serine/threonine kinase 354 622 IPR001245 GO:0004672|GO:0006468
Lja1g6044 667 MobiDBLite consensus disorder prediction 632 667 - -
Lja1g6044 667 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Lja1g6044 667 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Lja1g6044 667 ProSiteProfiles Protein kinase domain profile. 350 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g6044 667 CDD STKc_IRAK 356 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6044 Lja-Chr1 111359513 111362753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6044 14 664 Receptor kinase-like Gene Family AT4G05200 42.647 1.46e-168 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g6044 PK_Tyr_Ser-Thr 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6044 - - lja:Lj1g3v0052350.1 1035.02