Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6043 ATGATTCATTCTCTTATGGTTTCCAAATCCATTCAACCCTTGCTCTTTCTCTGCACTCTTGCTTTCCTTTTGGATATTGCCTTTGGTGACCCTCCATATGAAATTTGTGGCACAAGCAGCAGTTATGCAAATGGGAGTCCCTTTCAAAACAATCTAAGCAACCTCCTTCTCTCTTTACCCTCAAATGCTTCAATCTCCAAATCCTATAATACTTTTTCCGGATCCGGCACAGATAGAGTTTATGTCCTTTACATGTGCCTCAACTATGTTTCCAATGAAACTTGCCAGAATTGTCTAACAACTGCAATAGAGGACATTGTGAAACTCTGTCCTCAAGCAAAAGAAGCAGTTGTATGGGAAGAACTCTGCCTATTACATTATTCCAATTCCAATTTCATAGGAATGTTGAATGTCACAGGAAATATTGGCAAAGATAACAAGCAGAATGTTTCAGAACCTGAAAAAATTGAGTCTGTTGTGAATGAGATATTGACCAATCTTACTGAGAGAGCATCTTTTAATGTTTCTGCAAATAAGTATGCCACTGATGATGTTCCCTTTGAAGATAAAACAATATATGCCTTAGTGCAGTGCAGCAATGATTTATCAGCCAGTGATTGCAATAGGTGCCTGCAAAGTGCCATCAGAGATATAAAAGGTTGCTGCTATGCTTCCATTGGGGCCAGAGTTATGAGTCGTAGCTGTTATTTGAGATATGAGTTTTATCCTTTTTACCTTGGCGCATCAGAACCTAAAGGGTCTTCAACAGGCAATGATGAAGGCAAAAATAATTCAGGCAAAAAATGGATGATTATATCCATTGTAATTGGGGTATGCTTGGTGATGATAGTAATTTCCATTTCCTGCTTGTACTATGTCAAGAATAAAAGTAGGAATGGATTGGACAAAATATCTGGGGATTCCCCTTTCATTGATCTTGGATCTCTTTGTGCTGCTACCAAAAACTTTTCTGATTCAAATATGCTTGGACAAGGTGGCTTTGGACCTGTTTACAAGGGGATACTTAGTGATGGCCAGGAAGTGGCAATCAAGAGGCTCTCAAGTTGCTCAGAGCAGGGATCAGAGGAATTCATAAACGAGGTTCTGCTCATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTGGGATTTTGTGTAGATGGAGAAGAGAAGCTTCTTGTGTATGAGTATTTGCCCAATGGAAGTCTTGATGTTGTTCTTTTTGATCCAAGGCAACGTGCAAGGCTTGATTGGACTAAACGAGTGGATATAATAAATGGAATAGCTAAGGGGATTCTTTATCTTCACGAAGATTCTAGACTTAAAATAATTCATAGAGATCTGAAAGCAAGTAATGTGTTGTTGGACCATGACATGAATCCGAAGATCTCAGACTTTGGAATGGCCAGGATATTTGCAGGAGATGCAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGATACATGGCTCCAGAGTATGCAATGGAGGGGTTATATTCCATAAAATCTGATGTGTTTGGGTTTGGAGTTCTATTGCTTGAGATCATTACAGGGAAACGTAATGCAGGTTTCTATCACTCTAAAAGCTCCCCTAGCCTTCTAGCATATGCATGGTCCCTATGGAATGAGGGGAAGGGGATGGAATTAGTGGACCCCTTGTTAACTGAGTCATGCCTTGAAGATGAGTTTTTGAGATACATGAATATTGGACTACGATGTGTTCAAGAAGATCCGTATGATAGGCCAAGCATGTCATCTATTGTTTTGATGTTGAAGAATGAATCAGTAACACTTAGGCAACCAGAAAGACCTCCTTTCTCTGTAGGGAGACTCAATGTTGATGAACCAGAATCTGAAGAATGCTCACTCAATTTCATAACTGCTTCTGATATACTGCCCCAGTGA 1914 0.396 MIHSLMVSKSIQPLLFLCTLAFLLDIAFGDPPYEICGTSSSYANGSPFQNNLSNLLLSLPSNASISKSYNTFSGSGTDRVYVLYMCLNYVSNETCQNCLTTAIEDIVKLCPQAKEAVVWEELCLLHYSNSNFIGMLNVTGNIGKDNKQNVSEPEKIESVVNEILTNLTERASFNVSANKYATDDVPFEDKTIYALVQCSNDLSASDCNRCLQSAIRDIKGCCYASIGARVMSRSCYLRYEFYPFYLGASEPKGSSTGNDEGKNNSGKKWMIISIVIGVCLVMIVISISCLYYVKNKSRNGLDKISGDSPFIDLGSLCAATKNFSDSNMLGQGGFGPVYKGILSDGQEVAIKRLSSCSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKLLVYEYLPNGSLDVVLFDPRQRARLDWTKRVDIINGIAKGILYLHEDSRLKIIHRDLKASNVLLDHDMNPKISDFGMARIFAGDAGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFYHSKSSPSLLAYAWSLWNEGKGMELVDPLLTESCLEDEFLRYMNIGLRCVQEDPYDRPSMSSIVLMLKNESVTLRQPERPPFSVGRLNVDEPESEECSLNFITASDILPQ* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6043 637 SUPERFAMILY Protein kinase-like (PK-like) 309 620 IPR011009 -
Lja1g6043 637 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 61 634 - -
Lja1g6043 637 ProSiteProfiles Protein kinase domain profile. 323 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g6043 637 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Lja1g6043 637 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Lja1g6043 637 CDD STKc_IRAK 329 596 - -
Lja1g6043 637 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 61 634 - -
Lja1g6043 637 Gene3D Phosphorylase Kinase; domain 1 288 398 - -
Lja1g6043 637 SMART serkin_6 323 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g6043 637 Pfam Salt stress response/antifungal 36 129 IPR002902 -
Lja1g6043 637 Pfam Salt stress response/antifungal 148 241 IPR002902 -
Lja1g6043 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Lja1g6043 637 Gene3D - 32 132 IPR038408 -
Lja1g6043 637 Gene3D - 141 244 IPR038408 -
Lja1g6043 637 Pfam Protein tyrosine and serine/threonine kinase 327 592 IPR001245 GO:0004672|GO:0006468
Lja1g6043 637 Gene3D Transferase(Phosphotransferase) domain 1 399 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6043 Lja-Chr1 111354575 111357688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6043 15 609 Receptor kinase-like Gene Family AT4G05200 43.700 2.30e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja1g6043 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6043 - - lja:Lj1g3v0052360.1 963.755