Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6041 ATGGGTGATTCTGATGAACAAGTGTGTAGTTTCTTCAGAAAACCTGTCAATAAGAAGAATATAAGGAAACGAACTACTGATCATCAAGAAGATGATGAGGATGACACAAACACTGAAACCTCTTTATTACACACCCAGAGAAAGACCTTCAAGCCAGACAATAAGTTGTACTTTTCCACTGGCTCTACAAAACCCTCTACAGCTGCAGAACCAACTCAAGAATTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACCGCAACTCTAGAGACTGAGACTGACTTTTCCACAGATGCCCGAGCCATACGTGAAAGGGCTCTCAAGCAAGCAGCCACTAGTCTCAAGGGGAAAGCCAAAACTTCTGAGGATGATAAGTTGTACAAGGGAATCAACAATTACAAAGACTACAAGGCTGGCTTCCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGGCACATGGTCCTCTCAGGGCTTCAGCTCATATAAGAGTTTCAGCTAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAAACTGGTTACTGTGGGTATGGTGATTCCTGCAAGTTTATGCATGATCGAGGGGACTACAAGTCTGGATGGCAATTGGAGAAAGACTGGGATGATGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCGGGTGAGGATGCAGTTGAGGAGGGTGCTAATGTCACGGATGAAGAGGACGATGATTCATTACCATTTGCGTGTTTCATCTGTAGACAGCCATTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCACGCAAAGAATAAAAAGTGTTTTGTCTGCAACCAGCCAACACTCGGCACTTTTAATGTTGCTCAGGAGATACGCAAGAAGATGGCTGAGGATAATAAATAA 945 0.4339 MGDSDEQVCSFFRKPVNKKNIRKRTTDHQEDDEDDTNTETSLLHTQRKTFKPDNKLYFSTGSTKPSTAAEPTQEFQFESSKEIQVQHDSKATATLETETDFSTDARAIRERALKQAATSLKGKAKTSEDDKLYKGINNYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWDDAEKARKMRLAAGEDAVEEGANVTDEEDDDSLPFACFICRQPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGTFNVAQEIRKKMAEDNK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6041 314 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Lja1g6041 314 MobiDBLite consensus disorder prediction 53 72 - -
Lja1g6041 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 178 203 IPR000571 GO:0046872
Lja1g6041 314 ProSitePatterns Zinc finger RING-type signature. 269 278 IPR017907 -
Lja1g6041 314 Pfam Zinc finger, C3HC4 type (RING finger) 253 294 - -
Lja1g6041 314 SUPERFAMILY RING/U-box 253 296 - -
Lja1g6041 314 SUPERFAMILY CCCH zinc finger 176 208 IPR036855 GO:0046872
Lja1g6041 314 SMART ring_2 254 291 IPR001841 -
Lja1g6041 314 CDD RING-HC_RNF113A_B 252 292 - -
Lja1g6041 314 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 4 313 - -
Lja1g6041 314 Gene3D - 175 209 - -
Lja1g6041 314 ProSiteProfiles Zinc finger RING-type profile. 254 292 IPR001841 -
Lja1g6041 314 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Lja1g6041 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 311 IPR013083 -
Lja1g6041 314 PANTHER ZINC FINGER PROTEIN 183 4 313 IPR039971 -
Lja1g6041 314 MobiDBLite consensus disorder prediction 1 44 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6041 6 312 C2H2 Transcription Factor Family AT1G01350 69.032 8.76e-160 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g6041 zf-C3HC4_3 1.1e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6041 K13127 - gmx:100787434 546.199