Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6035 ATGGAGACCATTGACGTTCCTTTCACTGATGAGCAACAAGACTCCAACCAGCGACCCCGGAAGAAGGGCTACCACCGCCACACCACGCACCAGATTCACCAAATGGAATTGTTCTACAAGCATTGTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCGGCGAGCTGGGGTTAGCGCCTTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGGCTCAAAGTGAACGCCAGGAGAATGCGCATTTGAAGGCTGAGAATGAAAAACTCCTCGTTGAGAACATGCGGTACAAGGAGGCCTTTAGTAAGGCTACATGTACCACCTGTGGAGGCCCTGCTTCGCCTGGCGAAATGTCCTATGACGAGCAGTTTATGAAGTTGGAGAATGCTAGATTGAGAGAAGAGATTGAGAGGATTTCAGGAATTGTGGCAAAATATGCTGGGAAGTCCACAACATCCTACTCCAGCCTTTTATCTCAAAATTACAATCAAATGCCTTCTTCTTCGCGAGCATTTGATCTCGGAGTAGGAAACTATGGTGGTGATGGCAATGACCTTCTTAGGTCATCACTCCCCCCAATTCTTGCTGATGCTGACAAACCTATCATTGTGGAGGTTGCTGTTGCTGCAATGGAGGAGCTAGTAAGGTTAGCTCGTGCTGGACACCCTTTATGGGTCCTCAGCAACAACCACAATGCTGAGATACTGAATGAAGAGGAATACCTCAGGGTGTTTCCTAGGGGTACAGGTTCCAAACCCTTCGGCGTAAGGTCTGAATCTTCAAGAGATTCAGCTATTATTATGATGAACCCAGCCAACTTAGTTGATATGTTAATGAACGTGAACCAATGGGCAAGTTTCTTTTGCCACATTGTGTCCAAGGCATCAACACTGGAAGTGCTCTCAACAGGCGTGGCAGGAAACTACAATGGCGCATTACAAGTGATTCAAGCTGAGTTCCAGCTGCCTACACCACTTGTTTCTACTCGTGAGAACTATTTGGTGAGATACTGTAAGCAGCATCCAGATGGGATATGGGCTGTGGTTGATGTGTCCTTGGATAATCTGCGACCCAGTACAATATCAAGAAACCGAAGAAGGCCCTCTGGTTGTGTGATTCAACCATTGCCAAGTGGCTACTCCAAGATTACTTGGGTAGAGCATGTAGAGGTTGATGATAGAGCGGTGAATAGCATATATAGGCCTCTAGTTGGGTCTGGCCTTCCCTTTGGAGCTAAACGCTGGGTAGCTACATTAGATAGACAGTGTGAACGTCTTGCTAGTTCAATGGCCAGCATCATACCAGCAGGGGACATTTCGGTAACCGATGCTGATGGAAGAAAGAGTATTCTGAATCTGGCAGAGAAAATGGTGATGGGCTATTGTACTGGTGTTGGTGCTTCATCTACTTGGTCAACGCTAGTCGGAAGCAATGATATAAGGGTGATGACCCGAAATGGTGTGGATGAACCGGGCAGAGACCCCAGTCTTGTGCTGAGTGCTGCAACTTCCTTATGGCTTCCAGTCCCTCCAAAGAGGGTTTTTGATTTCCTTCGTGATGCAAACAGTAGGAGTCAGTGGGATATTCTCTCCAATGGGGGTCTAACTGAAGAACTGGTACACATAGCAAATGGGCGTAACCCTGGCAACTATGTCTCTATACTTCGTAACAATAATGCTGAAACCACCAACATGGTGGTACTTCAAGAAAGTTGCACTGATTCAACTGGGTCATATGTTATTTATGCACCTGTGGATGTTAGTGCCATGAATTTAGTTCTGACCGGTGGGGATCCAAGTTATGTTGCCCTGCTACCCTCAGGCTTTGCAATTCTTCCTGATGGGCCACCTAGAGTGAATAATGAAGGACTCATACTTGAAGTTGGAGGTGGAGGTACTTTACTCACAGTTGCATTTCAGATCTTGGCTAATTCAGCCCCGGATGCAAAGCTAACTATTACTTCAGTGCCGACTGTTCGTGATTTGATTAAGTGCACAATTGAAAGGATCAGTTCTGCCGTGATGGATCCAATCCCCTAA 2052 0.4659 METIDVPFTDEQQDSNQRPRKKGYHRHTTHQIHQMELFYKHCPHPDDKQRKELSGELGLAPLQIKFWFQNKRTQMKAQSERQENAHLKAENEKLLVENMRYKEAFSKATCTTCGGPASPGEMSYDEQFMKLENARLREEIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARAGHPLWVLSNNHNAEILNEEEYLRVFPRGTGSKPFGVRSESSRDSAIIMMNPANLVDMLMNVNQWASFFCHIVSKASTLEVLSTGVAGNYNGALQVIQAEFQLPTPLVSTRENYLVRYCKQHPDGIWAVVDVSLDNLRPSTISRNRRRPSGCVIQPLPSGYSKITWVEHVEVDDRAVNSIYRPLVGSGLPFGAKRWVATLDRQCERLASSMASIIPAGDISVTDADGRKSILNLAEKMVMGYCTGVGASSTWSTLVGSNDIRVMTRNGVDEPGRDPSLVLSAATSLWLPVPPKRVFDFLRDANSRSQWDILSNGGLTEELVHIANGRNPGNYVSILRNNNAETTNMVVLQESCTDSTGSYVIYAPVDVSAMNLVLTGGDPSYVALLPSGFAILPDGPPRVNNEGLILEVGGGGTLLTVAFQILANSAPDAKLTITSVPTVRDLIKCTIERISSAVMDPIP* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6035 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 679 IPR042160 -
Lja1g6035 683 SMART START_1 209 429 IPR002913 GO:0008289
Lja1g6035 683 SUPERFAMILY Bet v1-like 457 674 - -
Lja1g6035 683 CDD START_ArGLABRA2_like 204 428 - -
Lja1g6035 683 SUPERFAMILY Homeodomain-like 10 78 IPR009057 -
Lja1g6035 683 MobiDBLite consensus disorder prediction 1 28 - -
Lja1g6035 683 Coils Coil 70 104 - -
Lja1g6035 683 Gene3D - 211 428 IPR023393 -
Lja1g6035 683 SUPERFAMILY Bet v1-like 201 431 - -
Lja1g6035 683 Pfam START domain 209 429 IPR002913 GO:0008289
Lja1g6035 683 Gene3D - 7 96 - -
Lja1g6035 683 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Lja1g6035 683 SMART HOX_1 20 82 IPR001356 GO:0003677
Lja1g6035 683 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Lja1g6035 683 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 679 - -
Lja1g6035 683 CDD homeodomain 21 79 IPR001356 GO:0003677
Lja1g6035 683 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Lja1g6035 683 ProSiteProfiles START domain profile. 200 432 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6035 Lja-Chr1 111278198 111281408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6035 3 678 Homeobox Transcription Factor Family AT4G21750 64.485 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g6035 START 3.3e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6035 K09338 - gmx:100815499 928.702