Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6033 ATGAGTCCAAAATTAGCAGAACATAATACAAATAATGGTTATCTGCAGTCAACTACTGGTTTCACCACGGGAAAGCCAGTTATCGTTGGAGCTAACGCAATTTCTTCTGAGCAAGATACCAGGAAGGGTTGGTCTAGTGGGTCTCAGCTTCCTCCTGTTGATGATTCCTCAGTTATAGCAGAAGATGCATTCACCTCTTCAGCTTATTCTGGTGTATCACTGGGTCAGGTATCTGGATTCCAGAACCCAATAAATCAGAGTCAAGGCTCTGGTCAGCGTATTGATGCTTGGAAGATTTCTAGTCATCCATCTGTTTCTACCCGACACCCCTTTAATATTGAGAACAAAGACTTCAATAACGGGAACCTACATCAGTTGCCTAATCAGCTAGCTGGCCTGCTTTCATCTAACCCTCAAAACCGAGGACAAGCACCACAACTACAGTTTTTTCCATCTCAGGATCCGGCAGCATCACAATTTAGTGGGAGCTCTTTTCCAGGACATGGTGCTGCTAGAAATACACATTTGTCAAACGCGCCACCAAATATGGCATTCCCTTTACCCGGCCAAAATATGGTGAATAACTCTTTTCATTTGCTGGGGGCAGCCTTGCCACCCTTACATCCAGCCCGACCCCCATTGCTACCTCATCCTTATCCTACTCCTCTTGTTTCAAGTCAGCAGCCAACTGTTCCATATTCTAATTTGATTAATTCACTCGTGGCCCAAGGTGTATTCTCATGGGCTAATCCGGTCCCTGCACAGGATTCTGTTGGAATTGAGTTCAATCTGGATATTCCGAAGGTTCATCATGAATCTGCAATCAGTGCTTTATATGGTGATCTCCCTAGACAATGCAGAACTTGTGGTCTCCGTTTCAAATGCCAAGATGAGCACAGTAATCACATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGTGAGGATGTGGCTTAGTGGTGCAGAGGCATTAGGAACAGAATCAGCTCCAGGTTTTTTGCGAACTGATACGGTTGAGGAAAAGAAAGATGATGAAGAGTTGGCTGTTCCTGCTGATGAGGACCAGAATACATGTGCATTATGTCTAGAACCTTTTGGTAAGTTTTACAGTGATGAAACGGAGGATTGGATGTATAGAGGAGCTGTGTATCTTAATGCACCCAACGGAACAACAGCAGGCTTGAACAGGTCACAATTAGGCCCCATCATTCATGCTAAGTGCAGATCTGAATCTAGTGTGGCTCCATTTAATGATTTTGCGCTGGATGAAGGGGGCACCAGTGAGGAAGGGAGTAAAAGAAAACGAATGCGGCATTGA 1359 0.4474 MSPKLAEHNTNNGYLQSTTGFTTGKPVIVGANAISSEQDTRKGWSSGSQLPPVDDSSVIAEDAFTSSAYSGVSLGQVSGFQNPINQSQGSGQRIDAWKISSHPSVSTRHPFNIENKDFNNGNLHQLPNQLAGLLSSNPQNRGQAPQLQFFPSQDPAASQFSGSSFPGHGAARNTHLSNAPPNMAFPLPGQNMVNNSFHLLGAALPPLHPARPPLLPHPYPTPLVSSQQPTVPYSNLINSLVAQGVFSWANPVPAQDSVGIEFNLDIPKVHHESAISALYGDLPRQCRTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSVRMWLSGAEALGTESAPGFLRTDTVEEKKDDEELAVPADEDQNTCALCLEPFGKFYSDETEDWMYRGAVYLNAPNGTTAGLNRSQLGPIIHAKCRSESSVAPFNDFALDEGGTSEEGSKRKRMRH* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6033 452 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 1 427 - -
Lja1g6033 452 ProSitePatterns Zinc finger C2H2 type domain signature. 286 306 IPR013087 -
Lja1g6033 452 MobiDBLite consensus disorder prediction 153 177 - -
Lja1g6033 452 MobiDBLite consensus disorder prediction 432 452 - -
Lja1g6033 452 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 427 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6033 Lja-Chr1 111269919 111272561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6033 224 451 C2H2 Transcription Factor Family AT4G04885 64.912 9.95e-100 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6033 K14400 - lja:Lj3g3v1541390.1 592.423