Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6032 ATGAGCAGCAATGACATGATGGGGCAGAAGCTTCCCCCTCCGACACTGGTGGATCGATTCAAGGCTCTACTCCGGCGACGCGATGATGACCCTCGCTTTAGGGCTTCCGAAGAGATTGTCCAGATTTACGAGCTCTTGTTGTCTGAACTCACCTGCAATCTCAAGCCCATCATCACCGATCTCACCATCATCGCCGAGCAGCAGAGGGAACACGCTGAGGGCATTGCTGATGCTATTTGCACCAGGATTCTCGAGGTGCATGCAGATCAAAAGCTTCCTTCACTTTATCTTTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTAAATACTTCTCTTTACGGCTACCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAACCTCACTTGCATTCTGCTATGCGTCATCTCTTTGGTACCTGGTCCAAAGTCTTCTCTGCTCCTGTTCTACGTAAGATTGAAGCTCAATTGCAATTTTCACGAGGAGTTAATAACCAACCATCCAATGTCAATCCCCTCAGGACTTCTGAATCACCTCGACCAACTCATGGGATACATGTTAATCCAAAATACGTAAGACAGATGGAATGCTCTAGTTCAAATATAGATAGTGTTGGAGGTGAAAGGTTGGACTCAACAGGGACAGGAGGTAATACAAGCTTTGGCCTCGTAGCTAACAAAATCCATCAATTTGGGCCTAGTAGGCATGGAAGGTCCTCCTCACCATCAAGAATTGGAATTGATATGCCTTTGTCCACATATGCGGATGAATATCCCGCTGACAATTCTACTGGCAGGACAATTGAGAGAGAATCTCCTCATCATGCAGTTGATTATGGAGTAGTTAAAACATTAGGTAGAGAAGAAGAGTTGAGTGAATGGCAGAGAAAGCAGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTATGACATACAGTCTTAGTAACGGACAACAGCGTCAAAGTCCTAGAGCTCTGATTGATGCATATGGAAGTGACAAAAGTCAAGAAACTTCTAGCAGTAAACCTTTCTTAGTTAAACGGCTTGGTAGAAATGGTATAGACAAGGTTTCGACAACGTCATGGCAGAATACTGAAGAGGAGGAGTTCGATTGGGAAGATATGAGTCCAACATTAGTAGAACATAATAGAAATAATGGTTTTCTGCAGTCAACTACTGGTTTCACCACGGAAATGCCAGTTACTGTTGCAGCTAATGCAATTTCTTCTGAGCAAGATACCAGGACGGGTTGGTCTAGTGGGTCTCAGCTTCTTCCGGTTGATGATTCCTCAGTTATAGCCGAAGATGTATTCGCCTCTTCAGCTTATTCTCGTGTACCACTGGGTCAGGTATCTGGATTCCAGAATCCAATAAATCAGAGTCTAGGCTCTGGTCAGCGTAATGATGCTTGGAAGATTTCTAGTCATCCATCTAATTCTACACGACACCCCTTTAATGTTATGGGAGGAGGTAGAAATCTTCTGATGCCTCCTATTGATAACATTCCCAATACTGATGTAAACTCGTATGGTGCTCGGCTGGCTGCGTCAAGGATGCTTCCTGGTCTCAAGTCCAATGTGGAGGGTGGTCCTCCACCAGTTTTGCCAGCAACTTTTGAAATGAGGCCCTCTGTAAATGTGCATGCTGCTCGTCCTCCCAGCTTAAACCCTGCATTTCAGTTTAAAAACAATGTCAGATTTGAATCAATAAATGCTAATAATAACAGTGCAAATCATGGTCCCAATAATTCCTTGCTTATGCGTGAGCAGTCATTGTACAATGTTGAGGACAAAGACTTTAGTAAAGGGAACCTATATCAATTGCCTAATCAGCAATCTGGTCTGGTTTCATCTAACCCACAAAACCGAGGACAAGCACCACAACTACAGTTTTTTCCCTCTCAGGATCCGGCAGCATCACAATTTAGTGGGAGCTCTTTTCAAGGACATGGTGGTGCTAGAAATACACATTTGTCAAATGCGCCACCAAACATGCCATTCCCTTTACCAGGCCAAAATATGGTGAATAACTCTTTACATTTTCTGGGGGGAGCCTTGCGACCCTTACATCCAGCCCGGCCGCCATTGCTACCTCATCCTAATCATACTCCTCTTGTTTCAAGTCAACGGCCAACTGTTCCATATTCTAATTTGTTTAGTTCACTCGTCGCCCAAGGTGTAATCTCATTTCCTAATCAGGCTCCTGCACAGGATTCTGTTGGAATTGAGTTCAATCTGGATATTCTGAAGGTGCGTCATGAATCTGCAATCAGTGCTTTATATGGTGATCTCCCTAGACAATGTACAACTTGTGGTCTCCGTTTCAAATGCCAAGATGAGCACAGTAATCACATGGATTGGCATGTGACTAAGAACAGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGGATGTGGCTTAGTGGTGCAGAGGCATTAGGAACAGAATCAGCTCCAGGTTTTTTGCCAAATGATACGGTTGAGGAAAAGAAAGATGATGAAGAGTTGGCTGTTCCTGCTGATGAGGACCAGAATACATGTGCATTATGTGGAGAACCTTTTGATGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTGTATCTTAATGCACCCAACGGAACAACAGCAGGTTTGGACAGGTCACAATTAGGCCCCATCATTCATGCTAAGTGCAGATCTGAATCTAGTGTGGCTCCATCAGATGATTTTGTGCTGGATGAAGGGGGCACCACTGAGGAAGGTGGTCAAAGAAAACGAATTCGGAGTTGA 2811 0.4422 MSSNDMMGQKLPPPTLVDRFKALLRRRDDDPRFRASEEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAEGIADAICTRILEVHADQKLPSLYLLDSIVKNVGQEYVKYFSLRLPEVFCEAYRQVQPHLHSAMRHLFGTWSKVFSAPVLRKIEAQLQFSRGVNNQPSNVNPLRTSESPRPTHGIHVNPKYVRQMECSSSNIDSVGGERLDSTGTGGNTSFGLVANKIHQFGPSRHGRSSSPSRIGIDMPLSTYADEYPADNSTGRTIERESPHHAVDYGVVKTLGREEELSEWQRKQFSGDSRKRFQTMTYSLSNGQQRQSPRALIDAYGSDKSQETSSSKPFLVKRLGRNGIDKVSTTSWQNTEEEEFDWEDMSPTLVEHNRNNGFLQSTTGFTTEMPVTVAANAISSEQDTRTGWSSGSQLLPVDDSSVIAEDVFASSAYSRVPLGQVSGFQNPINQSLGSGQRNDAWKISSHPSNSTRHPFNVMGGGRNLLMPPIDNIPNTDVNSYGARLAASRMLPGLKSNVEGGPPPVLPATFEMRPSVNVHAARPPSLNPAFQFKNNVRFESINANNNSANHGPNNSLLMREQSLYNVEDKDFSKGNLYQLPNQQSGLVSSNPQNRGQAPQLQFFPSQDPAASQFSGSSFQGHGGARNTHLSNAPPNMPFPLPGQNMVNNSLHFLGGALRPLHPARPPLLPHPNHTPLVSSQRPTVPYSNLFSSLVAQGVISFPNQAPAQDSVGIEFNLDILKVRHESAISALYGDLPRQCTTCGLRFKCQDEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESAPGFLPNDTVEEKKDDEELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGTTAGLDRSQLGPIIHAKCRSESSVAPSDDFVLDEGGTTEEGGQRKRIRS* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6032 936 MobiDBLite consensus disorder prediction 908 936 - -
Lja1g6032 936 Gene3D - 32 161 IPR008942 -
Lja1g6032 936 MobiDBLite consensus disorder prediction 166 188 - -
Lja1g6032 936 SUPERFAMILY ENTH/VHS domain 34 160 IPR008942 -
Lja1g6032 936 ProSitePatterns Zinc finger C2H2 type domain signature. 770 790 IPR013087 -
Lja1g6032 936 CDD CID_Pcf11 43 160 - -
Lja1g6032 936 MobiDBLite consensus disorder prediction 166 184 - -
Lja1g6032 936 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 10 911 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lja1g6032 936 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 10 911 - -
Lja1g6032 936 MobiDBLite consensus disorder prediction 605 665 - -
Lja1g6032 936 Pfam CID domain 54 154 IPR006569 -
Lja1g6032 936 SMART 558neu5 38 160 IPR006569 -
Lja1g6032 936 MobiDBLite consensus disorder prediction 606 664 - -
Lja1g6032 936 ProSiteProfiles CID domain profile. 35 163 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6032 Lja-Chr1 111259856 111266974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6032 658 936 C2H2 Transcription Factor Family AT4G04885 59.857 7.61e-104 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6032 K14400 - gmx:100794796 1200.65