Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6031 ATGGTGAGGGTTAGTGTGCTGAATGATGCTCTCAAGAGTATGTACAATGCTGAGAAACGTGGCAAGCGTCAGGTCATGATCAGGCCATCCTCCAAGGTCATCATCAAGTTCCTTATAGTCATGCAGAAGCATGGCTATATCGGCGAGTTCGAGTATGTTGATGACCACAGGGCTGGCAAAATTGTTGTTGAATTGAATGGTAGACTCAACAAGTGTGGAGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAGGAGATTGAAGGTTGGACTGCAAGGTTGCTCCCATCTAGACAGTTTGGGTACATTGTCTTGACTACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAG 393 0.4529 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6031 130 Gene3D - 1 69 - -
Lja1g6031 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lja1g6031 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja1g6031 130 PANTHER BNAA02G06730D PROTEIN 1 130 - -
Lja1g6031 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja1g6031 130 Gene3D - 70 130 - -
Lja1g6031 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja1g6031 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6031 Lja-Chr1 111255249 111257201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6031 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 98.462 7.79e-94 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6031 K02957 - thj:104814862 261.151