Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6027 ATGGGTGTTCAAACCATTGTGACTGTGGTTCTTCTCCTTATGCTTCTTCTCATCATTCTCTTCCTCTTCTTTCTCTTCAAACCATGGCGCTTCTTTTTCCCTTCTCGTTTCCGCTCTTCCATCAAGGCTGGTGTTGGTGTTGGTGTTGGTGAGCTTGAGAGGCCCCTCGTTCCTGATGAAAACGATGCTGCTTCTGCTGCTGCAAACTTGTCATTCCATGAATTGCCTAGAGATTATGATCTTGAAGGTGCTTGTTATCCCAATGAAGCTCATTTTCGATCACCCAGAACCCATGGCCAGGAACTTGTTCACAAGCAAAGGTTTCAGTCCTTTTCTCCTTCGTCTAATTTGCCCCCAGGTGATACTTTGATTCTCGATGTTATCTCTCATCCTTCTCAAGATGTTGATGTTGATGTTGATGTTGGCCAAACACTTAAGTTCACTCCATCTCACATAGCTCAAATTCCAAGGCATAGCACCACACCTACCCATTTTCAGAATGATAAGCTGCAGGATTTTGTGCAAAGAGATATCTCTGATCAAAGAAGTTGCCTTACTCTGGAGGTTATCAGTGGCCCTTCTTGTGGACTTCGCTATTCCGTGCAGTCAACAAATCCCTCTAGTCTGCCGCTAACCTTAGGAAGAGTTCCTCCGAGTGATTTATTGATCAAGGATTCAGAGGTGTCTGGAAAGCATGCATTGATAAAGTGGAATATGGATAAGATGAAATGGGAGTTGGTGGATATGGGTAGCCTAAATGGGACATTTTTGAATTCTAAGTCAATCAACCATCCAGACACTGAAAGTAGGCATTGGGGAGATCCAATAAATCTTGCGAATGGAGATATTATAACCCTCGGAACCACATCAAAAGTAATTGTTCATATTTCTTCCCAAAATCAACATCGCATTCCCTTTGGGGTTGGTATGACATCAGATCCCATGGCTATGCGTCGAGGAGGAAAAAAGTTTCCTATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTGGATCAGTTTGGACTTTTCGGTATTTGTGATGGGCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAAGCTTTTTCCTGAGAAAGTTTCAGGTATATTATCGGATTCCTTAAAAAGGGAGAGGGTTTTATCACTCTGTGATGCTTCCGATGTTCTCCGAGATGCATTTTCTCAAACAGAAGCATGCATGAATCACTATTATGAGGGATGTACGGCAACGGTGCTTCTGGTGTGGACTGATGGTGATGAAAATTTCTTTGCACAATGTGCAAATGTTGGAGACTCTGCCTGTGTTATGAGTGTTGATGGGATACAAATAGAGATGACAGAAGATCACAAGATAACGAGTTCTTCTGAAAGACTCAGAATAAAAGGGACAGGCGAACCGTTGAAAGATGGGGAAACACGTCTATATGGTATAAATCTTGGAAGGATGCTTGGGGACAAATTCCTAAAACAGCAGGATTCTCGGTTCAGTTCAGAACCTTATATAAGTGAAGTCGTGTATATTGATCAATCAAGCAAGGCTTTTGCTGTCCTGGCTAGTGATGGATTATGGGATGTCATCGGCGCGAAGAAAGCAATTCAGCTCGTACTCCAGAATAGAGAGAGATACAATGCAGAGAAAGAGAATACAGCAGAAAAGATTGCTAGTTTGTTACTGAACGAGGCTAAAACACTCAGAACAAAGGATAATACCTCTGTAATTTTCTTAGACTTTGACACCCTTAACAGATTCTCATGTAAAGTTGGATCCTAG 1776 0.4251 MGVQTIVTVVLLLMLLLIILFLFFLFKPWRFFFPSRFRSSIKAGVGVGVGELERPLVPDENDAASAAANLSFHELPRDYDLEGACYPNEAHFRSPRTHGQELVHKQRFQSFSPSSNLPPGDTLILDVISHPSQDVDVDVDVGQTLKFTPSHIAQIPRHSTTPTHFQNDKLQDFVQRDISDQRSCLTLEVISGPSCGLRYSVQSTNPSSLPLTLGRVPPSDLLIKDSEVSGKHALIKWNMDKMKWELVDMGSLNGTFLNSKSINHPDTESRHWGDPINLANGDIITLGTTSKVIVHISSQNQHRIPFGVGMTSDPMAMRRGGKKFPMEDVCYYQWPLPGLDQFGLFGICDGHGGDGAAKSASKLFPEKVSGILSDSLKRERVLSLCDASDVLRDAFSQTEACMNHYYEGCTATVLLVWTDGDENFFAQCANVGDSACVMSVDGIQIEMTEDHKITSSSERLRIKGTGEPLKDGETRLYGINLGRMLGDKFLKQQDSRFSSEPYISEVVYIDQSSKAFAVLASDGLWDVIGAKKAIQLVLQNRERYNAEKENTAEKIASLLLNEAKTLRTKDNTSVIFLDFDTLNRFSCKVGS* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6027 591 SMART FHA_2 210 262 IPR000253 GO:0005515
Lja1g6027 591 Pfam FHA domain 212 287 IPR000253 GO:0005515
Lja1g6027 591 SUPERFAMILY PP2C-like 319 581 IPR036457 -
Lja1g6027 591 CDD FHA 185 293 IPR000253 GO:0005515
Lja1g6027 591 ProSiteProfiles PPM-type phosphatase domain profile. 307 579 IPR001932 -
Lja1g6027 591 Gene3D - 316 587 IPR036457 -
Lja1g6027 591 SUPERFAMILY SMAD/FHA domain 183 295 IPR008984 GO:0005515
Lja1g6027 591 CDD PP2Cc 315 579 IPR001932 -
Lja1g6027 591 PANTHER PROTEIN PHOSPHATASE 2C 41 589 IPR015655 GO:0004722|GO:0006470
Lja1g6027 591 ProSiteProfiles Forkhead-associated (FHA) domain profile. 211 262 IPR000253 GO:0005515
Lja1g6027 591 Pfam Protein phosphatase 2C 315 572 IPR001932 -
Lja1g6027 591 ProSitePatterns PPM-type phosphatase domain signature. 344 352 IPR000222 GO:0043169
Lja1g6027 591 Coils Coil 534 561 - -
Lja1g6027 591 SMART PP2C_4 301 577 IPR001932 -
Lja1g6027 591 Gene3D - 179 315 - -
Lja1g6027 591 PANTHER PROTEIN PHOSPHATASE 2C 70 41 589 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6027 24 581 PP2C-type Phosphatase Gene Family AT5G19280 57.513 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6027 K01090 - gmx:100170642 868.611