Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6026 ATGGAGGAGCAAGCATTGATTGGAGCGCTGAACCTGATATCTCGCAACCTTCCTCTTCCCCCTGACCTCTTCACCACCGTTTCATCCATTTATCACCGATCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCAATCTCAACCTCAACCTCAACAACAAGATTTGTTGGCAGACCTTCAAGATGCACTCTCCAACCACCGTGCCTCCTCCGCCTCCAAATTAGACCAAGCAACCGAAACCCGTTATCAAACTCTCATTCAACACCGCTTAACTCAGCTTCAAGAATTGCCTTCCACCAGGGGAGATAACCTACAGACAACTTGCCTGCTTGAGTTTTATGGTCTAAAGCTGGCAGAGTTGCAGAGGAAGGTTCGGACTGACGTCAGCTCTGAATACTGGCTCCGCGTTCAGTGTGCGTGTCCCGACAAACAATTGTATGATTGGGGCATGATGCGGTTGCGCCGCCCACCGTATGGTGTTGGAGATCCGTTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTAGAAGAGCAGACAAAGAATCACATAGAGACCAGAAAAAGAAGATTTTTTGCAGAAATATTGAATGCTGTCCGCGAGTTCCAGTTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACCCGGGCTGAGAAATTGAGATTCCAAGCTTTAAAGTCCGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTGACTTTACTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCTGTTCAACGTCAAAGGGACTCCAAAAAATCTGATGGTATTGAACCCTTGGAAGATTTAGAAGCTGATTTACCGGAGTCAGATGCCTTGAAGAATAAGGACTCGCCTCTTGATGAAGATGTGGATTTGATAGACTCTGATTATAATGGTGACACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACACTCAATTCAAGAAAAGGTAACTGAGCAGCCATCCATCCTTCAAGGTGGAGAATTAAGATCTTACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTGAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGACTGGACCTCACTTGATAGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATGAATGAATTCTCAACCTGGGCTCCAAGCATCAAAACTATTCTTTATGATGGACGGATGGATGAGAGGAAAGCAATGAAAGAAGAATTGTCAGGGGAGGGGAAATTTAATGTTTTGTTGACACACTACGATCTTATAATGCGAGACAAAGCATTTCTCAAGAAAATCCATTGGCTCTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTTGCCAGAACCCTGGACTCAAGCTATCACATTCAACGAAGACTTCTGCTGACGGGTACTCCAATTCAAAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTTCCAAGCATTTTCAATTCAGTTCACAATTTCGAGGACTGGTTCAATGCTCCCTTTGCAGACCGAGTTGATGTCTCACTAACAGATGAAGAACAGTTATTGATTATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGGAGGAAGAAGAATGAAGTGGAAAAGTTTCTCCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAAAAAGTGTATTATCAACAAGTAACTGACGTGGGCAGAGTTGGCTTAGCTACTGGTTCTGGAAAATCAAAAAGCCTACAGAACTTGACAATGCAACTTAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAGGCATAAGGAGGAAATCATCAGAGCATCAGGGAAGTTTGAACTTCTTGATCGATTGCTTCCAAAACTTCGGAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAAATGACTCGTCTGATGGACATTCTTGAAATTTATCTGCGACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACAGAGGAAAGAGGTTCCCTACTACAGAAATTCAATGCTCCTGATTCTCCGTACTTCATGTTTCTCTTGAGCACTCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACGGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAGCAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAAAAGGAAGTTAGAGTCTTTGTGCTGGTTAGTGTGGGATCAGTTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGGATTGATGCCAAAGTCATCCAGGCAGGGCTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGTGATCATGCGTAGAGGTACTAGCTCACTTGGGACAGATGTGCCAAGCGAGAGAGAAATTAATCGCCTTGCAGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAGAATGGATGAAGAGAGAAGGCTAAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAAGTGCCAGATTGGGTATACTCTGCACTAAATAAGGATGAGAAGGTCAAAGCTTTTGATAGTGGTAGTGTCAGTGGAAAGCGGAAAAGGAAAGAAGTGGTATATGCTGATACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAGCGCACAAGACATGCCTAAGCTTTCAGTTAAAAGGAAGAGGAGAGACAGCGATGCACAGGCCAGTGATGATATTGGGGCAGAAGAAAGGTTATTAGAGTTAAGAAATGGAAGTGAGAGATCCAGTGAGGATACTTTCAATGTGACCCCTGCCTCTAAGAGGCCCAAGCATGAAGAACTAAATTCCCAGAATCATGAAAACGAGGACGTAAGAGTAGGTGGTTTGAACGAGAATGTGTTTTCCTGGAATACTAAAAAAAAGAAGAGATCAAGCTATCTTAGCCAGGGTTCATTATCTGATACTAAAGGGCAGAATTCAAATGGAAGAGCAAACAGGAACTGA 3219 0.4312 MEEQALIGALNLISRNLPLPPDLFTTVSSIYHRSQPQPQPQPQPQPQPQPQSQPQPQQQDLLADLQDALSNHRASSASKLDQATETRYQTLIQHRLTQLQELPSTRGDNLQTTCLLEFYGLKLAELQRKVRTDVSSEYWLRVQCACPDKQLYDWGMMRLRRPPYGVGDPFAMDADDQIRKKRDAERLSRLEEQTKNHIETRKRRFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKKSDGIEPLEDLEADLPESDALKNKDSPLDEDVDLIDSDYNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPHLIVAPKAVLPNWMNEFSTWAPSIKTILYDGRMDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIHWLYLIVDEGHRLKNHECALARTLDSSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVHNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLATGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRHKEEIIRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGSLLQKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRLKENYRSRLMEEHEVPDWVYSALNKDEKVKAFDSGSVSGKRKRKEVVYADTLSDLQWMKAVESAQDMPKLSVKRKRRDSDAQASDDIGAEERLLELRNGSERSSEDTFNVTPASKRPKHEELNSQNHENEDVRVGGLNENVFSWNTKKKKRSSYLSQGSLSDTKGQNSNGRANRN* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6026 1072 SMART ultradead3 373 566 IPR014001 -
Lja1g6026 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 858 IPR027417 -
Lja1g6026 1072 Pfam Snf2-ATP coupling, chromatin remodelling complex 890 955 IPR029295 GO:0042393
Lja1g6026 1072 MobiDBLite consensus disorder prediction 316 331 - -
Lja1g6026 1072 Gene3D - 612 832 IPR027417 -
Lja1g6026 1072 MobiDBLite consensus disorder prediction 1009 1031 - -
Lja1g6026 1072 MobiDBLite consensus disorder prediction 1036 1072 - -
Lja1g6026 1072 Gene3D - 368 611 IPR038718 -
Lja1g6026 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 852 IPR001650 -
Lja1g6026 1072 PANTHER ATP-DEPENDENT HELICASE BRM 3 1022 - -
Lja1g6026 1072 SMART helicmild6 717 801 IPR001650 -
Lja1g6026 1072 MobiDBLite consensus disorder prediction 32 59 - -
Lja1g6026 1072 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Lja1g6026 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Lja1g6026 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 602 IPR027417 -
Lja1g6026 1072 SMART SnAC_2 894 955 IPR029295 GO:0042393
Lja1g6026 1072 MobiDBLite consensus disorder prediction 963 1072 - -
Lja1g6026 1072 CDD SF2_C_SNF 679 812 - -
Lja1g6026 1072 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Lja1g6026 1072 MobiDBLite consensus disorder prediction 37 53 - -
Lja1g6026 1072 MobiDBLite consensus disorder prediction 965 999 - -
Lja1g6026 1072 PANTHER SNF2/RAD54 HELICASE FAMILY 3 1022 - -
Lja1g6026 1072 MobiDBLite consensus disorder prediction 297 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6026 Lja-Chr1 111199631 111206802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6026 684 859 RAD5 or RAD16-like Gene Family AT5G43530 34.831 2.09e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g6026 SNF2_N 9.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6026 - - gmx:100775993 1781.92