Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6024 ATGGAACTTGAGGGTCGGCAAGATCAGTGCCTCCCGGAGGCGGAGAGGGAGAAGAAAGGCCAGAAGAGGAAGCTCGAACACCGTCAGATCTACGTTTCTCCCACCCTATTCTCCGACGTCTTGGATCACGTTTCAATTCTCCACTCCACTTTCTCCTCCAATGATTCCGATCGAGCTGCTGCTAAGCGCGCCACTCACGCCCTCGCCGATCTTGCTAAAAACGGTATTCATTTATTCCTTTCCTTCATTCCATCGTTCAATTGCGCTGATTCATTCATTCGTTTTGCAGAGGAAGTTGTCAATGTCATCGTTGAAGGAGGCGCCGTTCCGGCTTTGGTTAAGCATCTTCAACCGCCTCCTTTACCGGAAAATGACCGCATCATCATGCCGTTTCAACACGAGGTTGAGAAAGGGAGTGCGTTCGCACTCGGTCTTCTTGCCGTTAAGCCAGAACATCAACAGCTCATCGTTGACAATGGTGCCTTGAAGCATCTTGTTGATCTTTTGGAGAGGCATAATGATGGCTTAACGTCTCGGGCCATTGCTAGTCTAATTCGTAGGGCTGCAGATGCCATTACGAATCTTGCTCATGAGAACAGCAGTGTTAAAACCCGAGTCAGGATGGAAGGTGGGATTCCACCTCTTGTTCATTTGCTTGAATTTGCCGATATAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGAGAACTCTGGCCTTTAAAAATGATGAAAATAAAAACCAAATTGTTGAATGCAATGCGCTTCCGACTCTGATTCTAATGCTCCGTTCGGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAAAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGATTGCTTAGCTCCTGTTGCTCTGAAAGTCAGAGGGAAGCAGCCTTATTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGATTCACATTGTACAGAGAGGTGCTGTACGACCTTTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTCAGAGAAATGTCTGCCTTTGCATTGGGAAGATTGGCTCAGGACACACATAACCAAGCTGGTATTGCACACAGTGGTGGTTTAGTGCCATTACTGAAGCTTCTTGACTCAAAAAATGGGTCTCTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGATTGCTGGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAAATTCATGGCCGTGCACTGAACCATTTATTATATCTTATGCGAGTTTCGGAAAAGGCTTTTCAAAGACGAGTTGCTTTGGCACTTGCTCATCTTTGTTCTGCAAATGATCAGAGAAAAATATTTATTGATCACCACGGTTTGGAGTTACTTATTGGGCTTCTTGGCTCATCCAGCCCTAAGCCGAAACTTGATGGGGCTGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGACTTTGTCTCCCATAGATGCCGCCCCCCCTTCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACGTTGTCTGATGTTACATTTTTGGTCGAAGGCAAACGGTTTTATGCTCACAGAATTTGCCTTCTCGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAAAAGGATGCACGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACCCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGGCTTAAGAGACTCTGCGAATACACAATTGGACAGGATATATCGCTGGAGAATGTGTCAAGTATGTATGAACTTTCTGAAGCTTTTCATGCTATATCGTTGAGGAAAACATGCATCCTTTATATCTTGGAGCACTTTGATAAATTGAGTGCAAGGCCAGGACACTCTCATCTGATTCAGCTTATAATACCCGAGATCCGCAATTACTTTGTTAAAGCGCTTACAAAGGCCAATCCCAACATCCAGGCGCAGGATCAGCCATTTTATTATTGA 2181 0.4415 MELEGRQDQCLPEAEREKKGQKRKLEHRQIYVSPTLFSDVLDHVSILHSTFSSNDSDRAAAKRATHALADLAKNGIHLFLSFIPSFNCADSFIRFAEEVVNVIVEGGAVPALVKHLQPPPLPENDRIIMPFQHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLERHNDGLTSRAIASLIRRAADAITNLAHENSSVKTRVRMEGGIPPLVHLLEFADIKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLLDGEFIVQATKDCVAKTLKRLEEKIHGRALNHLLYLMRVSEKAFQRRVALALAHLCSANDQRKIFIDHHGLELLIGLLGSSSPKPKLDGAVALCKLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIGQDISLENVSSMYELSEAFHAISLRKTCILYILEHFDKLSARPGHSHLIQLIIPEIRNYFVKALTKANPNIQAQDQPFYY* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6024 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 252 294 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 199 239 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 481 521 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 325 365 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 283 323 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 96 148 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 366 406 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 241 281 IPR000225 GO:0005515
Lja1g6024 726 SMART arm_5 149 197 IPR000225 GO:0005515
Lja1g6024 726 SMART BTB_4 553 650 IPR000210 GO:0005515
Lja1g6024 726 Gene3D - 185 282 IPR011989 -
Lja1g6024 726 CDD BTB_POZ_ARIA_plant 540 655 - -
Lja1g6024 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 107 161 IPR000225 GO:0005515
Lja1g6024 726 Gene3D - 283 442 IPR011989 -
Lja1g6024 726 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 13 716 - -
Lja1g6024 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Lja1g6024 726 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g6024 726 Pfam Armadillo/beta-catenin-like repeat 206 238 IPR000225 GO:0005515
Lja1g6024 726 Pfam Armadillo/beta-catenin-like repeat 241 280 IPR000225 GO:0005515
Lja1g6024 726 Pfam Armadillo/beta-catenin-like repeat 325 364 IPR000225 GO:0005515
Lja1g6024 726 SUPERFAMILY ARM repeat 184 521 IPR016024 -
Lja1g6024 726 Gene3D - 38 184 IPR011989 -
Lja1g6024 726 ProSiteProfiles BTB domain profile. 553 620 IPR000210 GO:0005515
Lja1g6024 726 Pfam BTB/POZ domain 546 646 IPR000210 GO:0005515
Lja1g6024 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 210 IPR000225 GO:0005515
Lja1g6024 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 419 IPR000225 GO:0005515
Lja1g6024 726 SUPERFAMILY POZ domain 545 646 IPR011333 -
Lja1g6024 726 Gene3D Potassium Channel Kv1.1; Chain A 544 688 IPR011333 -
Lja1g6024 726 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 13 716 IPR044282 -
Lja1g6024 726 Gene3D - 445 527 IPR011989 -
Lja1g6024 726 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 245 IPR000225 GO:0005515
Lja1g6024 726 SUPERFAMILY ARM repeat 61 184 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6024 Lja-Chr1 111189534 111197266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6024 309 424 U-box Gene Family AT3G46510 29.661 1.61e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g6024 BTB 1.1e-25 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6024 1 111189534 111197266 Lja5g0502 5 4375572 4384462 PCT