Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6019 ATGGCATCCTTCTTTTCAGAACAACTGGAAGAGGATTCATCTTGGTGGATCAGGAGTCAACTCATTTGGCGTGTCTTCTTCAGTTTTGCTATTGTGGCTGTTGTGGTGCGAACTGTAATGGACTGGTGTAAGACTGGAAAATGTGGATTCATAATATCACATGGTCAAGAGAATTATTCATTATCAAATCTGTTCCCAATGGCTATTATTGGGGTTATTGGTGGTCTAGTAGGTGCTTTGTTCAATCAGCTGACACTCTATATCATTGCTTGGCATGGAAAACATCTTCACAAGAGAGGGGCTGAAGATTCGCGGTGTGAGGGTCATGAGCGCATTCGCTATACCAGAGATCAGCTTTTACAGCTTGGAGAGAATCCTCAAGCTGCTACTCCTCCCTTCTTACCATCAGCCAATGATGTTATCCCTATGGCTACTTATCAAGCTGTTAAGAGGAAGAAGTTAGGCATACCCAAAGACATGGTCGGTGTGATTATTGGTAAAGGTGGGGAAACCATCAAGTATCTTACTTTGCAGTCTGGGGCCAAAATCCAACTTAGCAGTGATATGGAAGCTGACCCCAATTCCCCAAATATATTGGTTGAGCTTAGGGGCACTCCTAATGCCATTGCCACTGCTGAGAAACTCATCAATGAAGTTCTTGCTCGACAAACTGATGAAGTCTGGATTAAAATTCCTAATGATAAGGTTGGTCTTGTAATTGGCAAAGGAGGAGAGACTATAAAGAGTGTGAGAGCCTGCAGTGGAGCACAAATTCAAGTGATACCTTTGCATTTTCCCTCCCCAGGTGACACATCAACAAAAAGAACCTTAAAAATTGTTGGGACTCCCCTTCAAATTGAGTCAGCAAAGCATTTGATTAATCAAGTCATAGCAATGTCTGATTCTTCTGCTGGTTATTCTAAGCAATCCCGAGTACCACCACCTCCATGTAGTAGCTGCAATTGCAAAGGTATCCCCCCTGCTGCTGCTGCTGCTCCTCCTCCTCCTCCTCCTCCTCCTATGCAGCAAAATCCTGCACCTTCAGTTGATGGGTCTACATATAATTTCAGTCAACCTCCCTCCTCTGGTTATAACCATCCAGGACTGGGTTATGATGCTTATAATGCACCACCACAATCAGGTTATGGCTCTGCTCCCTGCAGCTATGGTAGTAGTAACCCACCACATCAAGGAGGTTCATCCCAAATTGCCATTGCCCAGCAAAGTTATGGAAGCAATTATCAACCACAGTTTGGTTCTCTTTATGGTCATGGGCCCCTTCACTGGCTGCCTCACTCTATTTATGCACATTCACAGTCAGCAAGTACAGCAGGAGGAGGCTATGGTCACTCAGCAGCAATATATCTTCCTGCTGCCCATCCCCCACCAGGTTTTGATGGTCCTCCTCAGGCACCACCGTTATATGGAAACACTACTTCTTATGGTGCTGTTTATACTCACAAACCTTCTTATGCTAGTGTTGTTGCTAATGGAAGAGCACCTCAACAGGGTGATGTTGCTAAAGTAAAGCTTCACTAG 1539 0.4464 MASFFSEQLEEDSSWWIRSQLIWRVFFSFAIVAVVVRTVMDWCKTGKCGFIISHGQENYSLSNLFPMAIIGVIGGLVGALFNQLTLYIIAWHGKHLHKRGAEDSRCEGHERIRYTRDQLLQLGENPQAATPPFLPSANDVIPMATYQAVKRKKLGIPKDMVGVIIGKGGETIKYLTLQSGAKIQLSSDMEADPNSPNILVELRGTPNAIATAEKLINEVLARQTDEVWIKIPNDKVGLVIGKGGETIKSVRACSGAQIQVIPLHFPSPGDTSTKRTLKIVGTPLQIESAKHLINQVIAMSDSSAGYSKQSRVPPPPCSSCNCKGIPPAAAAAPPPPPPPPMQQNPAPSVDGSTYNFSQPPSSGYNHPGLGYDAYNAPPQSGYGSAPCSYGSSNPPHQGGSSQIAIAQQSYGSNYQPQFGSLYGHGPLHWLPHSIYAHSQSASTAGGGYGHSAAIYLPAAHPPPGFDGPPQAPPLYGNTTSYGAVYTHKPSYASVVANGRAPQQGDVAKVKLH* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6019 512 MobiDBLite consensus disorder prediction 330 403 - -
Lja1g6019 512 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 146 310 - -
Lja1g6019 512 CDD KH-I 156 216 - -
Lja1g6019 512 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 226 297 IPR036612 GO:0003723
Lja1g6019 512 Gene3D Clc chloride channel 4 105 - -
Lja1g6019 512 Pfam Voltage gated chloride channel 10 95 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6019 512 SUPERFAMILY Clc chloride channel 14 95 IPR014743 -
Lja1g6019 512 CDD KH-I 229 293 - -
Lja1g6019 512 Pfam KH domain 154 218 IPR004088 GO:0003723
Lja1g6019 512 Pfam KH domain 229 294 IPR004088 GO:0003723
Lja1g6019 512 Gene3D K Homology domain, type 1 225 316 IPR036612 GO:0003723
Lja1g6019 512 Gene3D K Homology domain, type 1 145 224 IPR036612 GO:0003723
Lja1g6019 512 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 146 310 - -
Lja1g6019 512 SMART kh_6 223 298 IPR004087 GO:0003676
Lja1g6019 512 SMART kh_6 148 221 IPR004087 GO:0003676
Lja1g6019 512 MobiDBLite consensus disorder prediction 346 364 - -
Lja1g6019 512 ProSiteProfiles Type-1 KH domain profile. 149 216 - -
Lja1g6019 512 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 341 373 - -
Lja1g6019 512 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 153 222 IPR036612 GO:0003723
Lja1g6019 512 ProSiteProfiles Type-1 KH domain profile. 224 293 - -
Lja1g6019 512 MobiDBLite consensus disorder prediction 381 403 - -
Lja1g6019 512 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 341 373 - -
Lja1g6019 512 MobiDBLite consensus disorder prediction 330 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6019 Lja-Chr1 111092044 111094416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6019 9 100 Ion Channels AT5G26240 60.396 7.03e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6019 K13210 - gmx:100782717 224.942