Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6014 ATGGCAGAAACTGCTTATACTGTGGCATCAGACAGTGAAATCACTGGGGAGGACAAGTCATCTACTTTTCCAGAAATTGCAATTGGAATTGATATTGGCACATCACAATGCAGTGTTGCTGTGTGGAATGGTTCCCAAGTGGAGCTTCTAAAGAACACAAGAAATCAGAAGATTATGAGATCATATGTGACTTTCAAAGATGACATCCCCTCTGGTGGAGTTACTGGACAACTCTCCCATGAGCATGAGATGCTGTCTGGAGCAACAATTTTCAACATGAAACGCTTGATTGGCAGAGTTGACACTGACCCAGTTGTCCATACAAGTAAAAATCTCCCATTTCTGGTGCAGACCTTGGGCGTCGGTGTTCGCCCATTTATTGCTGCATTAGTGAACAATATGTGGAGATCCACTACTCCAGAAGAAGTCCTTGCAATATTTCTGGTGGAATTGAGAGCAATGGTTGAAACTCAGCTGAAGCACCCCATAAGAAATGTGGTTCTTACAGTTCCGGTTTCGTTCAGTCGATTCCAGTTAACCCGGGTAGAGCGCGCTTGTGCAATGGCTGGTCTTCATGTTCTTAGGCTCATGCCTGAACCAACAGCAGTGGCTTTGTTATATGGTCAGCAACAGCAGCAGGCTTCTCATGAGAATATGGGCAGTGGGAGTGAGAAAATTGCTCTCATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTGACCGTTACTGCAGGAGGCGTATCTCAGATAAAAGCATTGGCCGGAAGTACCATTGGTGGAGAAGACTTACTGCAGAATATGATGCATCATCTCTTACCTGATTGTGAGAATATATTCAAGAACCATGGGGTTAAAGAAATTAAATCAATGGGCCTGCTCCGAGTTGCAACCTTGGATGCAATTCATCGGCTTTCATCTCAGAAGAGCGTTCAGGTTGATGTAGATTTGGGGGATGGTTTGAAGATAAACAAGGTTATAGACTGCGAGGAGTTTGAGGAGGTAAACAAAAATGTGTTTGAGAAATGTGAAAGCCTTATCATCCAATGCTTGCAAGATTCAAAAATAGAAGTTGAGGATGTAAATGATGTGATAATTGTAGGTGGATGTTCTTATATCCCAAGAGTGAAGAATCTCGTTACTAACATTTGTAAAGGGAAGAAGCTTTATGAAGGTATAAATCCTCTGGAAGCAGCAGTTTGTGGCGCAGCAATTGAAGGAGCTGTTGCTTTAGGAATCAATGATCCCTTTGGCAACTTGGACTTGTTAACTATTCAAGCCACACCTCTTGCCATTGGAATTCGAGCTGATGGGAACAACTTCATCCCTATCATTCCGAGGAACACCACAATGCCGGCACGAAAAGAGCTAGTTTTCACAACTATTCATGATAATCAAACCGAGGCATTGATCCTGGTCTATGAAGGTGAGGAAAAGAAGGCAGAAGAAAACCACTTGTTGGGATATTTCAAGATAGTAGGAATCCCTGCAGCACCTAAAGGAGTACCAGAAATCAATGTTTGTATGGATATAGACTCTGCAAACGTGCTGAGAGTTTTAACTGGTGTTGTGATGCCTGGATCTCGTCAAACTGCAGTTCCTGTTATGGAAGTGAGGATGCCAATGGTGGATGATGGGCATGGTTGGTGCGCTGAGGCCCTAAACAGAACCTTTGGTGCCACACTAGATTTGGTCACTCTCCATATAAAGGCATAA 1716 0.433 MAETAYTVASDSEITGEDKSSTFPEIAIGIDIGTSQCSVAVWNGSQVELLKNTRNQKIMRSYVTFKDDIPSGGVTGQLSHEHEMLSGATIFNMKRLIGRVDTDPVVHTSKNLPFLVQTLGVGVRPFIAALVNNMWRSTTPEEVLAIFLVELRAMVETQLKHPIRNVVLTVPVSFSRFQLTRVERACAMAGLHVLRLMPEPTAVALLYGQQQQQASHENMGSGSEKIALIFNMGAGYCDVAVTVTAGGVSQIKALAGSTIGGEDLLQNMMHHLLPDCENIFKNHGVKEIKSMGLLRVATLDAIHRLSSQKSVQVDVDLGDGLKINKVIDCEEFEEVNKNVFEKCESLIIQCLQDSKIEVEDVNDVIIVGGCSYIPRVKNLVTNICKGKKLYEGINPLEAAVCGAAIEGAVALGINDPFGNLDLLTIQATPLAIGIRADGNNFIPIIPRNTTMPARKELVFTTIHDNQTEALILVYEGEEKKAEENHLLGYFKIVGIPAAPKGVPEINVCMDIDSANVLRVLTGVVMPGSRQTAVPVMEVRMPMVDDGHGWCAEALNRTFGATLDLVTLHIKA* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6014 571 SUPERFAMILY Actin-like ATPase domain 26 210 IPR043129 -
Lja1g6014 571 Gene3D - 212 390 - -
Lja1g6014 571 PANTHER HEAT SHOCK PROTEIN 70KDA 4 568 IPR013126 GO:0005524|GO:0140662
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 54 66 - -
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 26 39 - -
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 361 377 - -
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 421 440 - -
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 393 413 - -
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 166 186 - -
Lja1g6014 571 PRINTS 70kDa heat shock protein signature 502 518 - -
Lja1g6014 571 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 423 529 IPR029047 -
Lja1g6014 571 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 4 568 - -
Lja1g6014 571 SUPERFAMILY Actin-like ATPase domain 224 410 IPR043129 -
Lja1g6014 571 Gene3D Actin; Chain A, domain 4 261 342 - -
Lja1g6014 571 CDD HSP70_NBD 28 408 - -
Lja1g6014 571 Pfam Hsp70 protein 27 520 IPR013126 GO:0005524|GO:0140662
Lja1g6014 571 Gene3D - 91 146 - -
Lja1g6014 571 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 419 533 IPR029047 -
Lja1g6014 571 Gene3D - 28 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6014 Lja-Chr1 111045997 111048356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6014 27 519 Calmodulin-binding Proteins AT3G12580 37.500 1.46e-102 322