Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6010 ATGGAGTTTGATGAGCAAGAAGAGCAAGATGAAGAAATGGGGATCCCGGAGTCACCGCCGCCGGTGCCGGCGAGTTACGACCCGCTTTTGAACTCAGCACCGAGATCCAAAATCGCAGAGGTTTCAGCGCCTGTAATCGGGAGGAAAGGCGGCTCGTTTACCCCGCCGGTGGCAGCGGGGGTTGTGAGGTACAGGGAATGCCAGAAGAACCACGCCGTCAGCTTCGGCGGCCACGCCGTCGACGGGTGCTGCGAGTTCATGGCTGCCGGAGATGAAGGCACGCTGGAGGCTCACCATGCCGCCTCCGGCGGCTACCTCCACCACCACCTGACAACATCTCCGACGGCGCCCCACCGGCCGTTAGCACTTCCACCGGCGACTTCAGGAGGTGGATTCAGCAGGGAGGAGGAAGACATGTCTAACCCTAGCAGCAGTGGTGGAGGCGGCGGAGGTGGAATGAAAAAGAGGTACAGGACCAAGTTCACGCCGGAGCAGAAGGAGAAGATGCTGGCTTTTGCAGAAGAGCTTGGTTGGAGAATCCAGAAGCATCAAGAAGCTGCTGTTGAACAATTCTGTGCTGAAACTTGTGTGAGGAGAAACGTTCTCAAGGTTTGGATGCACAATAACAAGAACACGCTTGGTAAGAAACCCTAA 654 0.5703 MEFDEQEEQDEEMGIPESPPPVPASYDPLLNSAPRSKIAEVSAPVIGRKGGSFTPPVAAGVVRYRECQKNHAVSFGGHAVDGCCEFMAAGDEGTLEAHHAASGGYLHHHLTTSPTAPHRPLALPPATSGGGFSREEEDMSNPSSSGGGGGGGMKKRYRTKFTPEQKEKMLAFAEELGWRIQKHQEAAVEQFCAETCVRRNVLKVWMHNNKNTLGKKP* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6010 217 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 134 216 - -
Lja1g6010 217 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 104 - -
Lja1g6010 217 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g6010 217 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 116 IPR006456 -
Lja1g6010 217 MobiDBLite consensus disorder prediction 111 156 - -
Lja1g6010 217 SUPERFAMILY Homeodomain-like 139 215 IPR009057 -
Lja1g6010 217 Gene3D - 139 214 - -
Lja1g6010 217 Pfam ZF-HD protein dimerisation region 62 100 IPR006456 -
Lja1g6010 217 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 134 216 - -
Lja1g6010 217 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 104 - -
Lja1g6010 217 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 154 211 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6010 Lja-Chr1 110999004 110999816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6010 1 213 ZF-HD Transcription Factor Family AT4G24660 47.458 1.33e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja1g6010 ZF-HD_dimer 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6010 - - gmx:100776421 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6010 1 110999004 110999816 Lja1g6010 1 110999004 110999816 ECH