Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6002 ATGAGAAGGTTCACGTGGCTAACGCCGTTCCGGCGCCACTTGCTTTCCTCTCTTTCCTCAGAACCTATCGTCGTCGATAAAGGAGATTCGTTGCGCAAATTGTTGACCTCTCGCCAATCGCTGCTTCTCGCACGAGCTTTGGGAAATTGCAGTTTTGTCACGAAAATGGAGGATTCTTTATCGTCGAGAATGCCGTTGAGATTTCGTCATATTTATGCTGCAGCATATTCTTCTTCGGCTGAACGAGATTATTATCGGACTCTTGGTGTTTCTGAAAGTGCCAGTCAGGACGAGATAAAAAAGGCATTTCACTCGCTCGCTAAAAAGTATCATCCAGATGCAAATAAGAATAATCCATCTGCGAAGAGGAAATTTCAAGATATAAGAGAAGCATATGAGACATTGAGAGACTCTAAAAAGAGGGCAGAGTATGACATGATGCGATCTAGAGGTTCAGAAAACATAGAATATGGAGATGCTGATACAGAAAGGTTTAAAAATGCTTTTCGATCCCATTTTTCTGATTCATTTCATAATGTATTCTCAGAGATATTTGAGGAAGCAACAACTCAATTCTCGTCAAATATAGAGGTGGAGTTGTCTCTTACTTTCTCAGAAGCTGCGACAGGATGCACTAAACATGTATCATTTGATGCGTTCGTTCCCTGTGATTATTGCAATGGACAGGGCTATCCACTAAATGCCACTCCAAAAGTTTGTCCAACATGCAGGGGCTTAGGCCGAGTTACAATCCCACCATTTACATCAACATGCATTACTTGCAAAGGATCTGGCCGTATCATTAAGGACCTGTGTAAGTGGTGTGGGGGATCTGGGGCTGTTGAAGGAATGAAAGAGGTCAAAGTTACAATACCAGCAGGCGTGGACTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGAGGTCGACCTGGAAGTTTGTACATTAAGATAAAGGTGGCTGAGGATTCAGTCTTTGTCAGAGATGGTGCAGATATCTATGTGGATTCTAATATTAGCTTTACACAGGCTATTCTTGGTGGCAAAGTTGATGTTCCTACTTTATCTGGGAAGATGGAAGTAAAGATACCTAAGGGTGTTCAACCAGGACAGCTTCTGGTCTTTAGAGGCAAAGGATTGCCAAAGCATGGGTATCTTATACATCATGGGGATCAGTATGTGCGTTTCCGTGTTAATTTTCCAACTGCAATTAACGAACGACAACGTGCTATACTTGAAGAATTAGCGAAGGAGGAAATAAAGGCAGGAAACAGCTCATCATTTGAAGAAAACTGGTGGCAGCAAGTTCTTGAATACATGACGGGCTCAAAGTTTTTGCTGGAGCTATCTGTGCTGACATTATTCCTTCTCTTCATTAACAAAATGTTGAACTGA 1410 0.4241 MRRFTWLTPFRRHLLSSLSSEPIVVDKGDSLRKLLTSRQSLLLARALGNCSFVTKMEDSLSSRMPLRFRHIYAAAYSSSAERDYYRTLGVSESASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAEYDMMRSRGSENIEYGDADTERFKNAFRSHFSDSFHNVFSEIFEEATTQFSSNIEVELSLTFSEAATGCTKHVSFDAFVPCDYCNGQGYPLNATPKVCPTCRGLGRVTIPPFTSTCITCKGSGRIIKDLCKWCGGSGAVEGMKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVAEDSVFVRDGADIYVDSNISFTQAILGGKVDVPTLSGKMEVKIPKGVQPGQLLVFRGKGLPKHGYLIHHGDQYVRFRVNFPTAINERQRAILEELAKEEIKAGNSSSFEENWWQQVLEYMTGSKFLLELSVLTLFLLFINKMLN* 470
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6002 469 SUPERFAMILY HSP40/DnaJ peptide-binding domain 330 417 IPR008971 GO:0006457|GO:0051082
Lja1g6002 469 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 281 IPR036410 -
Lja1g6002 469 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 446 - -
Lja1g6002 469 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Lja1g6002 469 CDD DnaJ_C 194 407 - -
Lja1g6002 469 Pfam DnaJ C terminal domain 196 406 IPR002939 -
Lja1g6002 469 Gene3D - 194 324 - -
Lja1g6002 469 CDD DnaJ_zf 223 279 IPR001305 GO:0031072|GO:0051082
Lja1g6002 469 PRINTS DnaJ domain signature 85 103 IPR001623 -
Lja1g6002 469 PRINTS DnaJ domain signature 103 118 IPR001623 -
Lja1g6002 469 PRINTS DnaJ domain signature 120 140 IPR001623 -
Lja1g6002 469 PRINTS DnaJ domain signature 140 159 IPR001623 -
Lja1g6002 469 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 326 IPR008971 GO:0006457|GO:0051082
Lja1g6002 469 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Lja1g6002 469 Hamap Chaperone protein DnaJ [dnaJ]. 80 444 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja1g6002 469 Gene3D DnaJ domain 79 193 IPR036869 -
Lja1g6002 469 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 34 446 - -
Lja1g6002 469 Gene3D - 327 436 - -
Lja1g6002 469 ProSiteProfiles Zinc finger CR-type profile. 210 284 IPR001305 GO:0031072|GO:0051082
Lja1g6002 469 Pfam DnaJ central domain 223 279 IPR001305 GO:0031072|GO:0051082
Lja1g6002 469 Gene3D - 253 286 - -
Lja1g6002 469 Gene3D - 219 252 - -
Lja1g6002 469 SUPERFAMILY Chaperone J-domain 79 174 IPR036869 -
Lja1g6002 469 Pfam DnaJ domain 83 145 IPR001623 -
Lja1g6002 469 SMART dnaj_3 82 140 IPR001623 -
Lja1g6002 469 CDD DnaJ 83 137 IPR001623 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja1g6002 Lja-Chr1 110844847 110860518 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6002 74 150 C2H2 Transcription Factor Family AT1G74250 40.244 3.39e-08 53.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6002 - - lja:Lj1g3v0246820.1 857.44
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6002 1 110844847 110860518 Lja1g6002 1 110844847 110860518 ECH