Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5997 ATGATCATGCAAAAGGAGAGTCCTCCCAGACGGCGTCGTTTTGGACATATTCATAGACATGTGTGGCTTGCTTTCTTGCTTCTTCTTATCATACAGCTTTCAATGCCAGCGACTGCTCAGACGATGGCGCCGGAAATGGAGCCGGATAGTAATAAATCCGTGGCCACCATCATGGGGATTGTGGCCCTTATGTTCCTTGTTTCAGGTTTTCTTTCCCTCTACTCCGGCAAATGCACTGAACGCCAAGCAGGCAGGCTCACCCTAGCTCACGCCGCCGCGGGCGGCAGCGGCCACCGGCAACTAAACGAGCTCTCCAACGGCCTCAACCAAGAAGTCATCGACACATTCCCCACCTTCCTCTACTCTCACGTGAAATGCCTCAAGATCGGCAAAGGCACACTCGCCTGCGCCGTGTGCCTTAACGAGTTCGAAGATGACGAAACCCTCCGCCTGATCCCCATCTGCAACCACGTCTACCACCACAGCTGCATCGACCTTTGGCTCGCTTCCCACTCCACCTGCCCCGTCTGCCGCGCTAGCCTTCTCCCAATAACACCCGACGACACCGCCACCAACCTCCCTCCTCCCACCGTCTCCATCCTAATGCCGGAAGATCAAGAAGAAGAGAACTCCCTAAACGAGGAACAAGAGAGAGACTCAGAAAATGACAACCAGAAAAGTAGTGATCACAGCTACACTGAACCGCTTCGCCGGTGTCGCACGACCAGCCATCCTATACGGTCACGGTCGACCGGGTTCTTGTCATCACTGCTGTCTCCGGTCGACCGTAACCGTCACTCGGTGGTGGTGCAACCTGGTGAAGATTGCGAGAGGTTCACGCTGAGGTTGCCGGATGAGGTTCGGAGCCAGATGCTGAGTTCCACGGCACTGAAGCGTGCGAAAAGCTGCGTGAGCTTCACGAGGATGAGTAGTGGCACGTGGGGTTATAGGACTAGAAGTGTTGGGAGGTTTGGGAGTGATCATGAGCAGTGGGGGTGCACTCTGACGCCGCCGAATTTCGGTTGGAATTGGAATAGGTCGGTGAAGAAATCTCCGGCGCGGTGTTCCGGGGTGGCTAAGGACAGTGAAGCCGGCGAGCGGTCCTCTGATTTCCTGTGTCCTCCGTAG 1128 0.5576 MIMQKESPPRRRRFGHIHRHVWLAFLLLLIIQLSMPATAQTMAPEMEPDSNKSVATIMGIVALMFLVSGFLSLYSGKCTERQAGRLTLAHAAAGGSGHRQLNELSNGLNQEVIDTFPTFLYSHVKCLKIGKGTLACAVCLNEFEDDETLRLIPICNHVYHHSCIDLWLASHSTCPVCRASLLPITPDDTATNLPPPTVSILMPEDQEEENSLNEEQERDSENDNQKSSDHSYTEPLRRCRTTSHPIRSRSTGFLSSLLSPVDRNRHSVVVQPGEDCERFTLRLPDEVRSQMLSSTALKRAKSCVSFTRMSSGTWGYRTRSVGRFGSDHEQWGCTLTPPNFGWNWNRSVKKSPARCSGVAKDSEAGERSSDFLCPP* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5997 375 SMART ring_2 136 177 IPR001841 -
Lja1g5997 375 MobiDBLite consensus disorder prediction 205 243 - -
Lja1g5997 375 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Lja1g5997 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 322 - -
Lja1g5997 375 MobiDBLite consensus disorder prediction 355 375 - -
Lja1g5997 375 Pfam Ring finger domain 135 178 IPR001841 -
Lja1g5997 375 CDD RING-H2_EL5_like 136 178 - -
Lja1g5997 375 MobiDBLite consensus disorder prediction 217 241 - -
Lja1g5997 375 PANTHER RING FINGER DOMAIN-CONTAINING 1 322 - -
Lja1g5997 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 183 IPR013083 -
Lja1g5997 375 SUPERFAMILY RING/U-box 130 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5997 Lja-Chr1 110712375 110714723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5997 23 342 Rapid Response to Elicitors AT3G05200 35.191 1.13e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5997 K10664 - gmx:100814384 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5997 1 110712375 110714723 Lja1g5997 1 110712375 110714723 ECH
Lja1g5997 1 110712375 110714723 Lja1g4291 1 55235454 55237244 PCT