Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5994 ATGGAATCAAAGCTTTTACTTGCAAAATCAAGGCAAGGCTGTGCGAAGCAGAGGTGTGGTCAGGGGCGGTGTCGCCGGGGCTGCGCCGCTGCGGTCGTGAGAGACAGAGAGAGGTCAGAGGAGAAGGAGGGAGGTAAGAAATCAGAGAAGAGATCAAAATGGAAAAATCAAATCAAAGCTGATAGTGGCAGGCGACGGCGGCGGCGGGCGACGAAGGACGGAAGGTTGAGACTCTTATGCAGCTATTCTTTGCAAATGCATTTGAGTTTGTTTGGAAGAGGAAGGTGGTTCTGGCTACAGGGGCAACTGGATGATGGGTTCAAGTGGAGAAAGTATGGAAAGAAGATGGTGAAAAAAAATCTCAATCCAAATAATAGCACTGCATTTTTTAAGAAGATGATGATAACTTCCTCCATCAGCTACACAAACACTGTTGTTGTTCACCTTAATGAGTTCCCTTGGGCTTCCTTTGATCATTATTTGGAAGACAAGGGAAGAGTAATCCGAGTCTTATTTCCAAAAAAATCAACAACCGAGCAGCTTAACCAGGAGGAAGGAGAAGACTCGGACCATGGCTGGGTAATCTCCGCCGCTGGGCAGGTCATGAGGTTGAAGATCAACAGCGAAGATTCCAAATCTGGGGCGGATCGATTGAGGTTCGGGGTGGGAGGGGTGCTGCACGGTATGGCAGGGAAAGAGATAGAGGGGTAG 711 0.4852 MESKLLLAKSRQGCAKQRCGQGRCRRGCAAAVVRDRERSEEKEGGKKSEKRSKWKNQIKADSGRRRRRRATKDGRLRLLCSYSLQMHLSLFGRGRWFWLQGQLDDGFKWRKYGKKMVKKNLNPNNSTAFFKKMMITSSISYTNTVVVHLNEFPWASFDHYLEDKGRVIRVLFPKKSTTEQLNQEEGEDSDHGWVISAAGQVMRLKINSEDSKSGADRLRFGVGGVLHGMAGKEIEG* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5994 236 ProSiteProfiles WRKY domain profile. 103 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g5994 236 Gene3D WRKY domain 100 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g5994 236 SUPERFAMILY WRKY DNA-binding domain 101 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g5994 236 SMART WRKY_cls 103 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g5994 236 Pfam WRKY DNA -binding domain 104 123 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g5994 236 MobiDBLite consensus disorder prediction 34 69 - -
Lja1g5994 236 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5994 Lja-Chr1 110677546 110681045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5994 103 125 WRKY Transcription Factor Family AT5G26170 78.261 5.54e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g5994 WRKY 0.00011 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5994 - - lja:Lj5g3v1626860.1 123.25