Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5993 ATGGCCTTAGAGGCAGTGGTTTTCCCACAAGATCCATTCACATACAATTACAAAGATTACTTGTACTCTTTAGTTGGAGGAAACCCTCCAAGTGAAGGATCAAACTGGAACCGCCACGAATACGGTTCCTTTGCAGAAGAAGAGAAAGCACTTCTGGGAATCATCAACAGTAACATAGAGCACAATCTCCATGCAAATTGGGACTCTTCTACTTCTCCTTCAGTGGTTCAAAATGTCAAAGATCAATGCGATTCACACTCATCCCCAGAGGCATGCATCATCGATTATTCCTCGCCCGGAACTGACAATCTTCCTCCTTCCATCACCACTGCGGCCACCGTCACCGGTCGGCGTAAAAGGCGCTGTACCAAGAGTGCGAAGAATCAGGAGGACATCGAAAACCAGAGGATGACTCACATTGCAGTTGAGCGCAATCGAAGGAAACAGATGAATGAGTACCTAGCTGTGCTCAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCTTCTATCATTGGAGGTGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTCTACAATGCATGAAGGGGCGAAACATCAAAACAAAGGAACAACAACAACAATGGCATGAAGATGGTTCATCTTCATCGCCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCTACACGTGCAACATCGGAGGGCAGCACGAGCTATCCCAACACGTGCTGCGAGGCAACGGTGGCACAGAACCAGAACCGGCCACCTGCCGCGGCGGACATAGAGGTGACCTTGGTGGATGGTCATGCCAATATTAAGATACTGTCAAAGAAGCAACCCGGGCAGCTTGTGAAGATGGTTCTTGGGATGCAAAGTCTTGGTTTCATCATTCTCCATCTTAATGTTACTACTGTGGAAGATATGGTACTTGCTTCTGTTAGTGTGAAGGTAGAGGAAGGATGTGAGCTGAACACAGTGGATGAAATTGCAGCTGCTATGAATCAATTATCAAGCACAGTTCAAGAAGAAGCTGCTAGTTTCTGCTGA 1041 0.4678 MALEAVVFPQDPFTYNYKDYLYSLVGGNPPSEGSNWNRHEYGSFAEEEKALLGIINSNIEHNLHANWDSSTSPSVVQNVKDQCDSHSSPEACIIDYSSPGTDNLPPSITTAATVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTVQEEAASFC* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5993 346 Gene3D - 125 212 IPR036638 GO:0046983
Lja1g5993 346 Coils Coil 182 202 - -
Lja1g5993 346 SMART finulus 140 191 IPR011598 GO:0046983
Lja1g5993 346 Pfam Helix-loop-helix DNA-binding domain 135 186 IPR011598 GO:0046983
Lja1g5993 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 185 IPR011598 GO:0046983
Lja1g5993 346 PANTHER MAX DIMERIZATION, MAD 1 343 - -
Lja1g5993 346 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 343 - -
Lja1g5993 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 205 IPR036638 GO:0046983
Lja1g5993 346 CDD bHLH_AtFAMA_like 137 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5993 Lja-Chr1 110596115 110598740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5993 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.783 2.15e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g5993 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5993 - - gmx:100803240 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5993 1 110596115 110598740 Lja1g5993 1 110596115 110598740 ECH
Lja1g5993 1 110596115 110598740 Lja1g4292 1 55281667 55283335 PCT