Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5991 ATGTTGATGAAACACAGAAAACTCTTCCCAGATGAAACAGCCACAAACCAAACCCAAGATTGTTATGGCTTTTGTGATCCATTATGCCCTTACAACTGCTACTCAAACCAAAATTACTACTTGCCTCCACCACCGCCTTTCGGCGGCGAGAACTCAAGGCAAGAGAACCACATCCCCTCCTACTTGATCATCCTTGTTTCTTTCTTCACTGTAATTTTTGTTCTTGTTGGATTCTACGTGATCAAATTGAAATGCTATGCTGATTGGTGTGGCCCGAGAAGAGTGAACAACTCTGTTCCCTCTCAAAACTCTGAAGAGTTTCTCAATGAGAACCAAGTTGAACACCCAGTGTGGCTAATCGCCACAATTGGGTTACAACAATCAATCATAAACTCAATCACAGTGTGCAAGTACAGAAAGGAAGAGGGTTTGATCGAAGGAACCGAGTGTTCTGTGTGTTTAAACGAGTTTCGTGAAGACGAAACCTTGAGACTCTTACCAAAATGCAACCATGCTTTTCACATCCCCTGTATTGACACATGGTTGAGATCTCACACCAATTGTCCTCTTTGCAGAGCAGGTATTGTAACTGTAACCAACAATGTTGCTCATGAATCAGCCATGTCAAATTCCGAATCCTTGGAGCAGGAAAATGCAAGCTTAGGAAGAAATCAAGAGACCCAGATGGAGAATTCACAGAATGATGGTGGGTTAAGCAACAATATTGTTAGCACTGTTGTTTCAGAAAACAGGGGTGGAACAGGGGAATCAAGTGAAGCACTAGATGAATCGAATTCCAAGGTTCCTGATCCACCTCAGAATCAAACGGTTGTTACTAATCCAATTGAGGTGAATTCTGTTTCCACTGAACATGAAAGGCATCACAATATTGATCATACACAGGATGAAACAGAATTGAACAGAGTTAATCTTCTCTTGAAGCAAGATGGTGATCACTCAAAAACATGTAGAACAGGAGCAGGAGCAATGCGTCGTTCTTCAATTGAAGAGTGTTTGCACATAAGTCCGGTATCAATGAAAAGATCATTTTCATGGAACGGGAGGATTCTATCTAGGAGAGGTTACATGAGTCTAAACTCAACTCTTCCTTATTAG 1116 0.4149 MLMKHRKLFPDETATNQTQDCYGFCDPLCPYNCYSNQNYYLPPPPPFGGENSRQENHIPSYLIILVSFFTVIFVLVGFYVIKLKCYADWCGPRRVNNSVPSQNSEEFLNENQVEHPVWLIATIGLQQSIINSITVCKYRKEEGLIEGTECSVCLNEFREDETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVTVTNNVAHESAMSNSESLEQENASLGRNQETQMENSQNDGGLSNNIVSTVVSENRGGTGESSEALDESNSKVPDPPQNQTVVTNPIEVNSVSTEHERHHNIDHTQDETELNRVNLLLKQDGDHSKTCRTGAGAMRRSSIEECLHISPVSMKRSFSWNGRILSRRGYMSLNSTLPY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5991 371 SMART FANCL_C_2 146 200 - -
Lja1g5991 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 201 IPR013083 -
Lja1g5991 371 MobiDBLite consensus disorder prediction 206 278 - -
Lja1g5991 371 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 362 IPR044675 -
Lja1g5991 371 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 362 - -
Lja1g5991 371 Pfam Ring finger domain 149 192 IPR001841 -
Lja1g5991 371 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Lja1g5991 371 SUPERFAMILY RING/U-box 139 202 - -
Lja1g5991 371 CDD RING-H2_PA-TM-RING 149 192 - -
Lja1g5991 371 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5991 Lja-Chr1 110543754 110545431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5991 4 199 C3H Transcription Factor Family AT1G72220 48.444 6.49e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5991 - - aprc:113847030 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5991 1 110543754 110545431 Lja1g5991 1 110543754 110545431 ECH