Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5990 ATGGGAACTGTTCTTCTATCCTTCTTCCTTTTTCTCTCACTGTTTGCACTGGAAATCAGTGCAAACAAGCAAATCCAAGCACTCACCAATCTTCACAAAATTTCACAAATTGATAGGAGTGACTTCGAGGTTCATGAGCTTGTCCAGCAAGATGCCTTTGTTCCACAACAAGAAGGCTCAAAGGAGGAAGATAGGATTGTGAGCCTTCCGGGACAGCCCCAAGTGAGTTTTGCTCAGTATGGAGGCTATGTCACAGTGGATCCATTGGCTGGGAGTGCCTACTACTACTACTTTGTTGAAGCTCATGGTTCGTCTACAGACTCATTTCCTCTCCTTCTTTGGCTCAATGGAGGTCCTGGATGCTCATCTCTAGGCTATGGAGCATTGCAAGAACTTGGACCTTTTAGAGCAAACAGTGATGGAAAAACACTATTCAGAAACCCCTACTCATGGAACAAGGTTGCAAATGTCTTGTTCTTGGAGTCACCTGCTGGAGTGGGATTTTCATATTCAAACAGATCATCAGAATATTCAGCCAATGGAGATAGGAAAACAGCAAGGACTAACTATGTGTTTTTGATCAACTGGTTGAAGAGGTTTCCTGAATACAAGAATAGAGATTTCTATATTGCTGGGGAGAGCTATGCAGGGCATTATGTTCCTCAACTTGCATATACCATTATGCATCATAACAAATTGGCAAACAATACAATCATTAATTTAAAAGGGATATTGATTGGGAATGCAGTGATTGATGATGAAACTCACACTCGAGGATTTTATGATTATCTGGCTAGTCATGCAATCATATCAAGCAAAGCAGCACATGACATGCACAAATTTTGTCATGTCACAGCTAATCAAACAGTTACAAGGGAATGCAAAGCAGTTACTAGTGAAGCTTTTGAGAATCTTGCACACATTGATATATACAACATTTCTGCTCCACTTTGCAAAAATCACAATCTCACTGCCTTGCCCAAGAAGACATCTGTTGTGATTGACCCATGTAGTGAGCTGTATGTGCATGCATATCTAAACAGAGGGGATGTTCAAGAGGCCCTCCATGCCAATGTCACCAAGCTCCAGCATGATTGGGAAGGCTGCAGTGAAGTCATTTTAAAGTGGAGTGATAGCCCTTCAAAAGTTCTTCCCATTTTACAAGATCTCTCTGATCATGGCCTTAGAGTTTGGATTTTCAGTGGTGACACAGATGGAGTGGTTCCTTTCACTTCAACTATGTATGCAATTGGAAAGATGAATCTTCCAATTAAAACTTCTTGGCGCCCTTGGTTTGCCTACGGAGAGGTTGGTGGCTATACTGAAGTGTATAAGGGAGACATGATATTTGCTACAGTGAGGGAAGCAGGGCATCAAGTGCCAAGTTACCAACCAGCAAGAGCCCTTGTTTTGATCAAAAGTTTCTTAGATGGCACTCCTCTTCCAAGTCCTGGAACAAATGCCTAG 1467 0.4206 MGTVLLSFFLFLSLFALEISANKQIQALTNLHKISQIDRSDFEVHELVQQDAFVPQQEGSKEEDRIVSLPGQPQVSFAQYGGYVTVDPLAGSAYYYYFVEAHGSSTDSFPLLLWLNGGPGCSSLGYGALQELGPFRANSDGKTLFRNPYSWNKVANVLFLESPAGVGFSYSNRSSEYSANGDRKTARTNYVFLINWLKRFPEYKNRDFYIAGESYAGHYVPQLAYTIMHHNKLANNTIINLKGILIGNAVIDDETHTRGFYDYLASHAIISSKAAHDMHKFCHVTANQTVTRECKAVTSEAFENLAHIDIYNISAPLCKNHNLTALPKKTSVVIDPCSELYVHAYLNRGDVQEALHANVTKLQHDWEGCSEVILKWSDSPSKVLPILQDLSDHGLRVWIFSGDTDGVVPFTSTMYAIGKMNLPIKTSWRPWFAYGEVGGYTEVYKGDMIFATVREAGHQVPSYQPARALVLIKSFLDGTPLPSPGTNA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5990 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 479 IPR001563 GO:0004185|GO:0006508
Lja1g5990 488 PANTHER CARBOXYPEPTIDASE 21 479 - -
Lja1g5990 488 ProSitePatterns Serine carboxypeptidases, serine active site. 210 217 IPR018202 GO:0004185
Lja1g5990 488 Gene3D - 337 374 - -
Lja1g5990 488 Gene3D - 383 478 - -
Lja1g5990 488 Pfam Serine carboxypeptidase 70 478 IPR001563 GO:0004185|GO:0006508
Lja1g5990 488 Gene3D alpha/beta hydrolase 60 320 IPR029058 -
Lja1g5990 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 170 IPR001563 GO:0004185|GO:0006508
Lja1g5990 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
Lja1g5990 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 147 159 IPR001563 GO:0004185|GO:0006508
Lja1g5990 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 196 221 IPR001563 GO:0004185|GO:0006508
Lja1g5990 488 SUPERFAMILY alpha/beta-Hydrolases 61 482 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5990 Lja-Chr1 110485226 110487665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5990 345 481 Calmodulin-binding Proteins AT2G22960 32.847 1.26e-17 79.0