Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5982 ATGGATCGCTACGAGATTCTCAAGGATATTGGGTCTGGGAATTTTGCTGTGGCCAAGCTAGTTAGAGATATCTTCACCAAAGAGCTTTTTGCTGTCAAGTTCATTGAGAGAGGCCACAAGATTGATGAGCATGTCCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATCGTTAGATTCAAAGAGGTCTTGCTGACACCAACACATCTAGCCATAATAATGGAGTATGCTGCTGGAGGAGAACTCTTTGAGAGGATATGCAATGCGGGTAGATTCAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAACTGATATCAGGAGTAAGTTACTGTCATTCAATGCAAATCTGTCATAGAGATCTGAAGCTTGAAAATGCACTCTTAGATGGGAGCAGTGCGCCACGAGTCAAAATTTGCGACTTCGGTTACTCAAAGTCATCTCTATTGCATTCACAACCAAAGTCTACCGTAGGAACTCCAGCTTACATTGCACCTGAGGTCCTAACGAGGAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATACGTGATGTTAATTGGGGCTTATCCTTTTGAAGACCCAGAGGACCCGAGAAACTTTAAGAAAACCATTGGTAGGATACTTAGTGTTCAATACTCAGTTCCGGATTATGTACGAGTCTCCATGGAATGTAAACATCTTCTATCACAAATATTTGTGGCGAGTCCTGAAAAGAGAATAACAATGCCAGAAATTAGAAACCATCCATGGTTTATGAGGAACTTACCTATAGAATTAATGGAAGGTGGAAGCTGGCAAAGCAGTGATGTAAATAATCCATCACAAAGTGTTGAGGAAGCCCTGTCCATTATACAAGAGGCAAGAAAACCTCTTAATATCCCCAGGGCTGGTGGCCTTCTTACTGGAGGCAGCATGGACCTAGATGACTTGGATGCTGATGCAGATCTTGAAGATATAGAAACTAGTGATTTTGTGTGCCCTCCTCTTTAA 1017 0.4179 MDRYEILKDIGSGNFAVAKLVRDIFTKELFAVKFIERGHKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIIMEYAAGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENALLDGSSAPRVKICDFGYSKSSLLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLIGAYPFEDPEDPRNFKKTIGRILSVQYSVPDYVRVSMECKHLLSQIFVASPEKRITMPEIRNHPWFMRNLPIELMEGGSWQSSDVNNPSQSVEEALSIIQEARKPLNIPRAGGLLTGGSMDLDDLDADADLEDIETSDFVCPPL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5982 338 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 332 - -
Lja1g5982 338 PANTHER SERINE/THREONINE KINASE 2 332 - -
Lja1g5982 338 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5982 338 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lja1g5982 338 SUPERFAMILY Protein kinase-like (PK-like) 2 269 IPR011009 -
Lja1g5982 338 CDD STKc_SnRK2 3 259 - -
Lja1g5982 338 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5982 338 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Lja1g5982 338 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5982 338 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5982 Lja-Chr1 110266306 110269990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5982 3 270 CBL-interacting serine-threonine protein kinases AT4G24400 42.960 2.93e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lja1g5982 Pkinase 6.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5982 K14498 - gmx:100798091 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5982 1 110266306 110269990 Lja1g5982 1 110266306 110269990 ECH