Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5977 ATGTGTTGTAATAATTTTCACATAGTGCTTATTATCTGGTTGTCGGTTTTGACAACAGCCGTGGTTTTTTCTCCGGTTGAATTCATCATTTGCTTGCTTCTTACTATTTTGGGCTATATTCCTAGTATAATTTATGCCATGTATGTCACTATCTTTGTTGATCGTGATCAGCACTTTGATGAATATAGGCGTTCTTTGTATGCACCAACACAACAATACTAA 222 0.3514 MCCNNFHIVLIIWLSVLTTAVVFSPVEFIICLLLTILGYIPSIIYAMYVTIFVDRDQHFDEYRRSLYAPTQQY* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5977 73 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 12 68 IPR000612 GO:0016021
Lja1g5977 73 PANTHER BNAA03G50460D PROTEIN 12 68 - -
Lja1g5977 73 Pfam Proteolipid membrane potential modulator 8 50 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5977 Lja-Chr1 109760828 109762033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5977 1 67 RCI2 Gene Family AT4G28088 50.746 2.23e-17 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5977 - - lja:Lj0g3v0097159.1 84.3445