Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5973 ATGAATCATCAGAACCAGCTTCAGCCTCTGCCTCTGCTTAGCAGCTTCCTAGGTTCAGCTTCTTCACAAGATGATGATAATTTGCTACTGAACCAACAAAATCATGATTCATGTTATGGTCAAGCTCATGAGGATGTCACAGTGGCATTACACATTGGTCTTCCTGACAATTCTTCCAACAACAACCATAGATTTGAGATTAATGCTGCTCCAATCCCCCAAGTTCCTAACAATTACTGGATTCCCACTGAAGAACAGATCCTCACTGGGTTCAGCCATTTCTCTTGTCCTGTTTGCCTCAAAGTTTTCAACCGTTACAACAACCTTCAGATGCATATGTGGGGACATGGATCACAATACCGAAGAGGACCAGACTCATTGAAAAGAACTCATCCAAGACCCTTGCTGGACATTCCATGCTACTGCTGCTCGAGTGGATGCAAGAACAACATTGACCACCCGAGAGCCAAGCCTCTCAAGGATTTCCGAACACTTAGAACACACTACAAGAGGAAGCATGGCTCCAAGCCCTTTGCTTGCCGCAAGTGCGGCAAGCCACTCGCCGTGAAAGGCGACTGGAGAACCCATGAGAAGAACTGCGGCAAGCGCTGGCTCTGTGTCTGTGGTTCGGATTTCAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCGTTTGGGTTTGGACATGGCCCTATGTCTTCTTCATCTGAAGGATTTTGA 720 0.4667 MNHQNQLQPLPLLSSFLGSASSQDDDNLLLNQQNHDSCYGQAHEDVTVALHIGLPDNSSNNNHRFEINAAPIPQVPNNYWIPTEEQILTGFSHFSCPVCLKVFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSSGCKNNIDHPRAKPLKDFRTLRTHYKRKHGSKPFACRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGFGHGPMSSSSEGF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5973 239 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 4 238 - -
Lja1g5973 239 Gene3D Classic Zinc Finger 156 228 - -
Lja1g5973 239 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Lja1g5973 239 PANTHER ZINC FINGER PROTEIN WIP2 4 238 IPR043584 GO:0003700|GO:0010468
Lja1g5973 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Lja1g5973 239 SUPERFAMILY beta-beta-alpha zinc fingers 160 198 IPR036236 -
Lja1g5973 239 SUPERFAMILY beta-beta-alpha zinc fingers 86 116 IPR036236 -
Lja1g5973 239 Pfam Zinc finger, C2H2 type 94 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5973 Lja-Chr1 109666403 109668171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5973 46 231 C2H2 Transcription Factor Family AT1G34790 67.500 4.29e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g5973 zf-C2H2 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5973 - - cam:101514022 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5973 1 109666403 109668171 Lja1g5973 1 109666403 109668171 ECH