Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5972 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACCAAAGTGTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAAATGCGCAGCTATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACTGCAAAATCAAAAGGCTATGGATTCGTAACATTCCGTGATCCAGAATCAGCAAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCACTAGGAAGGCCTAGACCATCACCTCCAAGAGGAAGGGGTACATTTCAAGGTGGGGTAGTGGGGACAGGGGGAGCACCACCGGGTGCGGCAGGGTCGTACGGCGGTGTTCCAGCGCCAATGCCGCCGCCACCACCAGTACTGTACCCGCCATATGGCTACCCCACCTACACTCCTGATCATTATGGGTACCACCAAGCTGCAATGTATAACCCTCAGATTCATCATCAGCAACCACAATACTATCATCAACAAATGTATGGAGCAGCATCATCTTCCACCCCATATTACTATGGCTATTCTGTGCAAGCAGCACCAAGGGGTACGTTTTCTACACCCCAGGCACATCGCATGCCAGCTGGACCCTCCTATTTATACTACCCTACTACACCAATTGAAGGTTCCTTCTCTGCTTATCGCCCAATTCAACAACAACCAGTAATAAGGCAACCCTCTCCTTCCCCTAGTGATTCTCAGACTCAGCAGCGTACATCATCCGAGACATCAGCTGGAGTAGTTATAACTTCAGAAAGTTGA 810 0.4815 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPSPPRGRGTFQGGVVGTGGAPPGAAGSYGGVPAPMPPPPPVLYPPYGYPTYTPDHYGYHQAAMYNPQIHHQQPQYYHQQMYGAASSSTPYYYGYSVQAAPRGTFSTPQAHRMPAGPSYLYYPTTPIEGSFSAYRPIQQQPVIRQPSPSPSDSQTQQRTSSETSAGVVITSES* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5972 269 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lja1g5972 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lja1g5972 269 PANTHER GEO13361P1-RELATED 1 263 - -
Lja1g5972 269 MobiDBLite consensus disorder prediction 231 269 - -
Lja1g5972 269 Gene3D - 3 111 IPR012677 -
Lja1g5972 269 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Lja1g5972 269 PANTHER - 1 263 - -
Lja1g5972 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lja1g5972 269 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5972 Lja-Chr1 109638017 109643387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5972 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 1.52e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5972 K25006 - gmx:100787086 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5972 1 109638017 109643387 Lja1g5972 1 109638017 109643387 ECH