Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5961 ATGGCTGATTCATTATCAGTTAATGTGGAATCTATAGCTAATCTTGAATTGCGTGCTAAACAACCACTTAGAACTACCCATGAGGCTGAACACTCTGGAACAGAATCACTCATTTCCAGCATCCAAAAGGCTATGGCTGAGTTATTTGGTACATACATTCTTATATTTGCTGGGTGTGGTGCTGCTCTTGTAAAAGAGAGTCTGCCACTCACAATAATAGGCATAGCAACCGTTTCAGGACTAGCTTTGACGGTGGCTACTTATTCATTTGGTCATATCTCAGGTGGCCATTTCAATCCTGCAGTTACAATTGCCTTGGCTGCATCCCGGAAATTTCAATTGAAATTGGTGCCTACATATGTGTTGTGTCAGTTGATGGGTGCCATACTGGCCACTGTGACACTCAAAGTGCTGTATCATGACAAGGTGGACATTGGAGTGACAGTGACTCAATACTTAAGCTCAACTTCTGATCTTGAAGCATTGGTTTGGGAATTCATAATCACTTCCATACTCATGTTCACTATTTGCGGTGCTGCAACTGATCACAGAGGGAGCAAAGATCTCACTGGGGTTGCAATTGGCATTGCAGTTATGATTAGCGCCATCATTGCCGGGCCTATTACTGGAGCTTCCATGAATCCTGCAAGGAGCTTAGCGCCTGCTATTGTATCTGGTGATTACAAAAACATTTGGGTTTATATCGTGGGCCCTACTCTAGGAGCAGTCTGTGCAAGTGTTCTTTACACCTTTCTAAGAGTAGCCAAACCAGTGAAACCTGAGCCATTTCATATGTGCAGTCATAATCCTTTAACTTTGTGA 822 0.4307 MADSLSVNVESIANLELRAKQPLRTTHEAEHSGTESLISSIQKAMAELFGTYILIFAGCGAALVKESLPLTIIGIATVSGLALTVATYSFGHISGGHFNPAVTIALAASRKFQLKLVPTYVLCQLMGAILATVTLKVLYHDKVDIGVTVTQYLSSTSDLEALVWEFIITSILMFTICGAATDHRGSKDLTGVAIGIAVMISAIIAGPITGASMNPARSLAPAIVSGDYKNIWVYIVGPTLGAVCASVLYTFLRVAKPVKPEPFHMCSHNPLTL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5961 273 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Lja1g5961 273 Pfam Major intrinsic protein 38 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 SUPERFAMILY Aquaporin-like 39 256 IPR023271 -
Lja1g5961 273 Gene3D Glycerol uptake facilitator protein. 5 261 IPR023271 -
Lja1g5961 273 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 TIGRFAM MIP: MIP family channel proteins 46 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PANTHER MAJOR INTRINSIC PROTEIN 1 264 - -
Lja1g5961 273 CDD MIP 42 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g5961 273 PANTHER AQUAPORIN NIP2-1 1 264 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5961 Lja-Chr1 109419400 109422546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5961 10 259 Major Intrinsic Protein MIP AT5G37820 43.137 2.30e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5961 K09874 - gmx:100798380 399.053