Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5946 ATGACGAACCAGAATATGGTGACTCAAGCTGGGAAATCATGTGTGAACAACAATAACACACTTATGGAGTTAGCAATGTCGATTTCAAACTCATGTGTTCTCCCTAGAGCAACAACAGTGCCTGAATTAATGGCTTTTCTTGGTGGGTTTTTGGGGCAACAACCAAACAAGAATAAGAAAACATTGGAGGATGGAAAATCAGGAGGAGCCAAAGCTAACACATGGATTGATTCCATGAGAGCTTCTTCTCCTACCCGAACCAAATCCACACAACCTTGTCACCAAAATCCTTGGACTCTTTACCATCCTTCGGCGCTGGACATGTTTGATCAGATAATATATGCTTCCAAAGGGAAGCAGATTGTGACCTTTCTTGATTATGATGGAACACTATCACCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGAGCGACATTGGAGGACATAGCAAGGCATTTCCCCACAGCCATTGTTAGTGGAAGATGCATAGACAAGGTTTATAATTTTGTGAAATTGGGGGAACTATACTATGCTGGAAGCCATGGCATGGACATCAAGGGACCATCAAATAGCCGAAGCACTAAGAATGGTAATGATGAAGGGGTACTTTTGCAGCCTGCAAATGAGTTCCTGCCCATGATCAGTGAGGTGTACAAGATCTTGGTTGAAAAAACAAAGTCTGTCCCAGGAGCTAAAGTAGAAAATAACAAGTTTTGCTTATCTGTGCATTTTCGCTGCGTTGATGAGAAGAGTTGGGTGCCATTGGCGGAGCAAGTTAGCTCAGTGCTCAATAAATACCCAAAGCTCAAGCTAACACAAGGAAGAAAAGTGTTGGAGATTCGACCAAGCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAAAGTCGCTAGGATACGCAGATTCTAGTAAAGTATTCCCAATCTATATTGGTGATGATCGAACTGATGAAGATGCATTTAAGGTGTTGCGCAATAGGGGCCAAGGGGTTGGGATTCTTGTTTCTAAAACTCCTAAAGAGACAGACGCATCCTACACTTTGCAAGATCCATCAGAGGTTGGAAAATTTTTGCGGCATTTGGTGGAGTGGAAAAGAACGAGTTCTAACTTCCACAAGTTATAG 1143 0.4217 MTNQNMVTQAGKSCVNNNNTLMELAMSISNSCVLPRATTVPELMAFLGGFLGQQPNKNKKTLEDGKSGGAKANTWIDSMRASSPTRTKSTQPCHQNPWTLYHPSALDMFDQIIYASKGKQIVTFLDYDGTLSPIVADPDKAYMSKKMRATLEDIARHFPTAIVSGRCIDKVYNFVKLGELYYAGSHGMDIKGPSNSRSTKNGNDEGVLLQPANEFLPMISEVYKILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWVPLAEQVSSVLNKYPKLKLTQGRKVLEIRPSIKWDKGKALEFLLKSLGYADSSKVFPIYIGDDRTDEDAFKVLRNRGQGVGILVSKTPKETDASYTLQDPSEVGKFLRHLVEWKRTSSNFHKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5946 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 380 IPR044651 GO:0004805|GO:0005992
Lja1g5946 380 SUPERFAMILY HAD-like 124 371 IPR036412 -
Lja1g5946 380 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 332 IPR006379 -
Lja1g5946 380 CDD HAD_TPP 124 362 - -
Lja1g5946 380 TIGRFAM T6PP: trehalose-phosphatase 119 368 IPR003337 GO:0003824|GO:0005992
Lja1g5946 380 Gene3D - 236 379 IPR023214 -
Lja1g5946 380 Gene3D - 121 226 IPR023214 -
Lja1g5946 380 Pfam Trehalose-phosphatase 124 358 IPR003337 GO:0003824|GO:0005992
Lja1g5946 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5946 Lja-Chr1 109034823 109037789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5946 117 367 Trehalose Biosynthesis Gene Families AT1G70290 27.715 2.04e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5946 K01087 - gmx:100792915 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5946 1 109034823 109037789 Lja1g5946 1 109034823 109037789 ECH