Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5944 ATGGCAGCTTCAATGGATTTCTACAACAGTTCAACAACTCAACTTCAATCAGATCCCTTTAGTGGTGGTGAGTTGATGGAAGTTCTAGAGCCTTTCATGAAGACTAGTCCTTCCTCAACTCCCTCTCAATCTTCTTCATCCCCTTTCTCAAATTCATTCCTACCTTCTTCCAACTCTACCTCTACCTCTTCTTACCCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTATCCCTTCTACCAAAACCAACCCTCTTCTTCTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCACTACACAGCCCAATTTCTACACAGATGGTTGCTCTTCCATGATGCCATACCTATTTCCCTCAGGGTTTTCATCATCATCACAAAGCCAAAACAACTACATAGGCTTTGAGCAAGAGCAACCAAGTTCTGTTATTGGGCTAAACCAGTTAACCCCATCTCAGATTAGCCAAATCCAAACCCAGATCCATTTCCAGTCCCAGCAGAACACCAGCAACTCTCTTAGCTTCCTCGCGCCGAAGCCGGTCGCAATGAAGCAATCTGGCACCCCTCCTAAGCCTACCAAGCTCTACAGAGGTGTGAGACAGAGGCATTGGGGGAAATGGGTAGCTGAGATTAGGCTTCCCAAGAATCGGACCAGGCTCTGGCTTGGGACATTTGAGACTGCTGAAGAAGCTGCTCTGGCTTATGACAGAGCAGCTTACAGGCTCAGAGGTGATTTTGCAAGGCTGAATTTTCCAAACTTGAAGGATCAAGGTTCTTGTTTTGGAGATTACAAGCCTCTGCATGCTTCTGTTGATGCTAAGCTTGATGCTATTTGTGAGAATTTGGCTGATTTGCAGAAACAGGGGACTAAAGCAGAGAAGGGTGTGAAGTCTTCTAAGAAAGGTTTGAAGAAACAGGTTCAGGCAGAGGTTGAGAACAAGGTGGAAGCTTCTTTGTCTCCAGTGGTGACTGAGAGTGAAAACTCTGATGATTCTTCTCCTTTGTCTGATCTTACATTTGGTGATTTCAGTGAGCCTCAGTGGGATGCTACTACTTCAGAATATCTTAATCTGCAGAAGTTTCCATCTTATGAGATTGATTGGGATTCTCTGTGA 1119 0.445 MAASMDFYNSSTTQLQSDPFSGGELMEVLEPFMKTSPSSTPSQSSSSPFSNSFLPSSNSTSTSSYPSSPSPSPSPYPFYQNQPSSSFSSSSSSSSSSSFFTTQPNFYTDGCSSMMPYLFPSGFSSSSQSQNNYIGFEQEQPSSVIGLNQLTPSQISQIQTQIHFQSQQNTSNSLSFLAPKPVAMKQSGTPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDRAAYRLRGDFARLNFPNLKDQGSCFGDYKPLHASVDAKLDAICENLADLQKQGTKAEKGVKSSKKGLKKQVQAEVENKVEASLSPVVTESENSDDSSPLSDLTFGDFSEPQWDATTSEYLNLQKFPSYEIDWDSL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5944 372 MobiDBLite consensus disorder prediction 33 67 - -
Lja1g5944 372 MobiDBLite consensus disorder prediction 1 89 - -
Lja1g5944 372 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5944 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 84 371 - -
Lja1g5944 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 85 - -
Lja1g5944 372 MobiDBLite consensus disorder prediction 320 342 - -
Lja1g5944 372 MobiDBLite consensus disorder prediction 317 342 - -
Lja1g5944 372 ProSiteProfiles AP2/ERF domain profile. 196 253 IPR001471 GO:0003700|GO:0006355
Lja1g5944 372 Gene3D AP2/ERF domain 196 254 IPR036955 GO:0003700|GO:0006355
Lja1g5944 372 Pfam AP2 domain 197 245 IPR001471 GO:0003700|GO:0006355
Lja1g5944 372 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700|GO:0006355
Lja1g5944 372 PRINTS Ethylene responsive element binding protein signature 219 235 IPR001471 GO:0003700|GO:0006355
Lja1g5944 372 CDD AP2 195 255 IPR001471 GO:0003700|GO:0006355
Lja1g5944 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 84 371 - -
Lja1g5944 372 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 85 - -
Lja1g5944 372 SUPERFAMILY DNA-binding domain 196 253 IPR016177 GO:0003677
Lja1g5944 372 SMART rav1_2 196 259 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5944 Lja-Chr1 108956018 108958164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5944 1 372 AP2-EREBP Transcription Factor Family AT1G78080 48.139 1.38e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g5944 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5944 K09286 - gmx:732559 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5944 1 108956018 108958164 Lja1g5944 1 108956018 108958164 ECH