Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5930 ATGAGAGAGCAAGGGGTTCTTCACCTTGAGAATGCTTCTCAACCAGGGAGGTCCCAGTGGGTTCTTGATTCTCCCAATCCACCCCCTCTATGGAAGAAGCTATTCAATTCAGTCAAGAAAACCATTCTGCCTCATGGTAACAACAGGTTCTGTTTTTCATCCAAGAACAGAACTTTCTGGGGACATGCACTCTCACTCTTGCAGAGTTTGTTCCCAATCCTTACCTGGATAAGAGATTACACATTCTCAAAGTTTAAAGATGATCTGCTTGCTGGTTTAACTCTTGCAAGCCTTTGCATTCCTCAGAGCATAGGATATGCTCATTTAGCACAAGTTGATCCTGAATATGGCCTGTATACAAGTATTGTTCCTCCTCTTATATATCCTCTGATGGGGAGTTCAAGAGAAATTGCAATTGGACCTGCAGCTGTAGTCTCCATGCTGTTATCTTCTCTGGTCCAGAAAGTGGAAGATCCTATTGCAAATCCTGAAGCCTATAGAAATCTAATCTTCACTGTGACCTTCTTCTCTGGAATTTTTCAAGCTGCATTTGGCATTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCTGGTGCAGCCATCATTATTGGCCTTCAGCAGCTGAAGGGGCTTCTGGGGATTACTCACTTCACCACCAAAACAGATGTAGTTTTAGTTTTAGTATCTGTTTATAAATCACTGCATCATCAAATTACTTCTGGAGAAAAATGGAGCCCTCTGAATTTTGTCCTGGGGTGTTCATTCCTGATTTTCCTTCTAGCAACTCGTTTTATTGGTAGAAGAAATAAAAAGCTTTTCTGGTTGCCTGCTCTTTCTCCTCTTGTATCAGTGATCCTATCAACTTTAATTGTGTACTTGTCTAAAGCTGATAAGATTGGGGTTAATATACTAAAGCATGTCAAAGGAGGATTAAATCCAAGTTCAGTTCACCAATTGCAATTTCATGATCAAAATGTTGGACAAGCAGCTAAAATTGGATTGATTTGTGCAATTATTGGACTCACTGAAGCAATTGCTGTTGGTCGATCTTTTGCTTCCATCAAAGGGTACCATCTTGATGGGAACAAAGAAATGTTATCAATGGGAGTCACGAACATTGCAGGATCATTAACTTCATGCTATGTGGCGACTGGTTCATTTTCAAGGACAGCTGTGAATTTCAGTGCAGGGTGTCAAACAGGAGTGTCAAATATTGTGATGGCCATAACAGTGGTTCTATTCTTAAAACTGTTTTCAAGGCTATTATACTACACCCCTGTGGCTATCCTTGCTTCTGTGATCCTCTCTGCACTTCCTGGATTAATTAACATACATGAGGCTTGTTATATCTGGAAGGTTGACAAATTAGACTTTCTTGCCTGCATTGGTGCTTTCCTTGGCATCTTGTTTGCATCTGTGGAAGTTGGTCTTCTTGTTGCTGTGTTTATCTCATTTGCAAAGATACTAATTCAATCAATTCGACCTGGAGTAGAAGTTCTTGGTAGAGTTCCAAGAACAGAAGCCTTTTGTGATGTTATGCAATATCCTATGGCCATAAGCACTCCAGGCATCATAGTGATTCGCATAAGCTCTGGCTCACTCTGCTTTGCAAATGCCAATTTTGTCAAAGAAAGAATCTTGAAGTCTGTCAAGGAAGAAGGAGATCATGACCTTCAAGGAACCACAAAGGGAAAGACCAGAGGAGTAATTCTGGACATGACAAACCTGATGAATGTTGACACTTCTGGAATTCTAGTTCTTGAGGAACTTCACAAGAGGTTGATTTCACGTGGCGTAGAATTAGCTATGGTCAACCCCAGGTGGCAAGTGATTCACAAGCTTAAGGTTGCACATTTTGTGGACAAACTTGGAAAAGAATGGGTTTTCCTTACTGTTGGAGAAGCTGTAGATGCAATAACTTCTAAAATTGTCAGTGCTTGA 1968 0.4075 MREQGVLHLENASQPGRSQWVLDSPNPPPLWKKLFNSVKKTILPHGNNRFCFSSKNRTFWGHALSLLQSLFPILTWIRDYTFSKFKDDLLAGLTLASLCIPQSIGYAHLAQVDPEYGLYTSIVPPLIYPLMGSSREIAIGPAAVVSMLLSSLVQKVEDPIANPEAYRNLIFTVTFFSGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGLLGITHFTTKTDVVLVLVSVYKSLHHQITSGEKWSPLNFVLGCSFLIFLLATRFIGRRNKKLFWLPALSPLVSVILSTLIVYLSKADKIGVNILKHVKGGLNPSSVHQLQFHDQNVGQAAKIGLICAIIGLTEAIAVGRSFASIKGYHLDGNKEMLSMGVTNIAGSLTSCYVATGSFSRTAVNFSAGCQTGVSNIVMAITVVLFLKLFSRLLYYTPVAILASVILSALPGLINIHEACYIWKVDKLDFLACIGAFLGILFASVEVGLLVAVFISFAKILIQSIRPGVEVLGRVPRTEAFCDVMQYPMAISTPGIIVIRISSGSLCFANANFVKERILKSVKEEGDHDLQGTTKGKTRGVILDMTNLMNVDTSGILVLEELHKRLISRGVELAMVNPRWQVIHKLKVAHFVDKLGKEWVFLTVGEAVDAITSKIVSA* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5930 655 Pfam Sulfate permease family 85 471 IPR011547 GO:0016021
Lja1g5930 655 SUPERFAMILY SpoIIaa-like 529 648 IPR036513 -
Lja1g5930 655 PANTHER SULFATE TRANSPORTER 10 650 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja1g5930 655 ProSiteProfiles STAS domain profile. 540 648 IPR002645 -
Lja1g5930 655 CDD STAS_SulP_like_sulfate_transporter 524 641 - -
Lja1g5930 655 Gene3D STAS domain 503 652 IPR036513 -
Lja1g5930 655 Pfam STAS domain 524 644 IPR002645 -
Lja1g5930 655 TIGRFAM sulP: sulfate permease 72 644 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lja1g5930 655 ProSitePatterns SLC26A transporters signature. 114 135 IPR018045 GO:0008271|GO:0008272
Lja1g5930 655 PANTHER SLC26A/SULP TRANSPORTER-RELATED 10 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5930 Lja-Chr1 108466158 108482623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5930 13 647 Inorganic Solute Cotransporters AT5G10180 62.794 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5930 K17469 - gmx:100776591 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5930 1 108466158 108482623 Lja1g5930 1 108466158 108482623 ECH
Lja1g5930 1 108466158 108482623 Lja1g5167 1 75661990 75670328 PCT