Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5928 ATGGGTCGTGTAAAGCTTGAGATAAAAAGAATAGACAACACCACAAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCTTATGAGCTATCCGTCTTGTGTGACATTGATATCGCCCTTATAATGTTTTCTCCATCAGGAAAAGTTAACCATTTTTCCGGTAGAAGGAGGATCGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGTTACCTTACCGCAGGGGTATTCAGAATAAGGAGTACTTGCTTAGGACACTTCAGCAACTGAGAAGTGAAAATGATATAGCTCTCCAGCTAGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCATCAAGAAGTTAGTAGGTTGCAGCAACAACTTCAAATGGCTGACGAGCAGATAAGGATATATGAACCTGACCCATTAAAGATGACATCCATGGGGGAGCTTGAAGCAAGCGAAAAACACCTACTAGATACATTGACACGTGTTATACAGAGAAAGGATTATCTCTTGAGCAACCAACTATCTTCGTATGATCCATCTGGTATTCAGGGGATGCCTACTTCTTTCGAGAATGTAAGTTGGTTGCAAGATGGTAGCCAGAACCATCCCCAGATGTTTGACGCTTCTGCCCCCTTGGATCCTCTCAGGGATTTACCTTCCACCGTGTATGGTTCATTTTCACAAGGCACAAGCTCAAACGCTGACCCGCGAGGCATGGGGGAGTGCCATGTGGCAAATCCGAGCGATGCAAACATTCCAGCATGGCCACAAGGATACACGTTGTATCCACACATTCAGCATGACATGGTGGCACCCCATCCTGACATCCAAGACATGATGCCACATGGGCAGGTGAACATGCCAATAACCGCCTCACACGTGGAGCCGCCGAAGAATGAAGCTGCTGAATATGATCAATGTAAACAACAGCAACAACAACCGCATCATCACCAGCTTAATACTCAATGA 1014 0.4458 MGRVKLEIKRIDNTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGKVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELHQEVSRLQQQLQMADEQIRIYEPDPLKMTSMGELEASEKHLLDTLTRVIQRKDYLLSNQLSSYDPSGIQGMPTSFENVSWLQDGSQNHPQMFDASAPLDPLRDLPSTVYGSFSQGTSSNADPRGMGECHVANPSDANIPAWPQGYTLYPHIQHDMVAPHPDIQDMMPHGQVNMPITASHVEPPKNEAAEYDQCKQQQQQPHHHQLNTQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5928 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 276 - -
Lja1g5928 337 Coils Coil 126 146 - -
Lja1g5928 337 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lja1g5928 337 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 276 - -
Lja1g5928 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lja1g5928 337 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lja1g5928 337 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g5928 337 MobiDBLite consensus disorder prediction 313 337 - -
Lja1g5928 337 MobiDBLite consensus disorder prediction 319 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5928 Lja-Chr1 108448065 108451046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5928 1 306 Type I MADS-box Gene Family AT1G22130 57.962 4.84e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja1g5928 SRF-TF 3.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5928 - - pvu:PHAVU_008G170400g 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5928 1 108448065 108451046 Lja1g5928 1 108448065 108451046 ECH