Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5916 ATGAGCTCGTCATCAGCTCAACTTGTCATCGCAAAAAGGATGGACATATATGAGCCATTCCATCAAGTGACCATGTGGGGGGACAGCTTTAAAATTGATGGTAGCCTGAATTCAATTGCTTCCCCAATGTTTATGATGAACACTAGCATGGAGAACAAGTCTGTATGTACACCTCATGAATCAAGTTCAAGGGAACCTTCTGGAGATGATCAAGAGACAACTAACAAAGCTGTTACTAAGGGGCTCAGACGCCTAGCTCAAAATCGCGAGGCAGCTAGGAAATGTCGGCTACGAAAGAAGGCTTATGTTCAACAATTGGAAACAAGCCGGCTGAAGCTCATGCAGTTGGAGCTGGAGGTTAAGAAAGCAAGAAATCAGGGTCTATACACAGGCAGTGGATTAGATGTCAGTTATATGGGATCATCTGGAACAATAAACTCAGGGGTATCTGTGTTTGAAATTGAATATGGACGTTGGGTTGAAGAGCAGGATAGACAGAATGTGGAACTAAGAAATGCATTGCAAACTCATGCACCTGATAACATGCAGCTTCAGATACTTGTTGAGGGTAGCTTGAGCCACTACTCAAAACTTTTCAAGATGAAAGCAGATGCTGCAAAAGCTGATGTCTTTTATTTATTCTCTGGTTCTTGGAAAGCCTCAGTTGAAAGACTTTTTCTTTGGATTGGAGGATCTCGCCCGTCACAGCTTCTAAATATCATTGTACCACAGCTTGAGAACTTGAGTGATGAACAAATTACCAGCATTAACAACCTCCGTCTATCATCTCAGCAAGTGGAAGACGCATTTTCACTTGGGTTGGAGAAGCTCCAGCAGAGCCTGGTCGACAACATACTAATTGATCCTCTGGTTGAAGGAAACTTTGGGCTTCAAATGGCTGCTGCCATGGACAATGCTAAAGCTCTAGCAAGCTTTGTAAACCAGGCAGATCACCTTAGGCACCAAACTCTGCTTTACATGTCTCGCATTCTGACAATTGGCCAAACTGCTCAAGGCTTGCATGCAATGGGGGGATATTTTCACCGTCTTCGCACTCTTAGTTCTTCATGGGCTGCTCGTTCATGTGATCCTGCATTCACTACTCAAAGCTCAAATTCAGTCTTCTTTGAACCTTAA 1137 0.4354 MSSSSAQLVIAKRMDIYEPFHQVTMWGDSFKIDGSLNSIASPMFMMNTSMENKSVCTPHESSSREPSGDDQETTNKAVTKGLRRLAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEVKKARNQGLYTGSGLDVSYMGSSGTINSGVSVFEIEYGRWVEEQDRQNVELRNALQTHAPDNMQLQILVEGSLSHYSKLFKMKADAAKADVFYLFSGSWKASVERLFLWIGGSRPSQLLNIIVPQLENLSDEQITSINNLRLSSQQVEDAFSLGLEKLQQSLVDNILIDPLVEGNFGLQMAAAMDNAKALASFVNQADHLRHQTLLYMSRILTIGQTAQGLHAMGGYFHRLRTLSSSWAARSCDPAFTTQSSNSVFFEP* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5916 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Lja1g5916 378 SMART brlzneu 76 136 IPR004827 GO:0003700|GO:0006355
Lja1g5916 378 Coils Coil 99 126 - -
Lja1g5916 378 Pfam Seed dormancy control 169 242 IPR025422 GO:0006351|GO:0043565
Lja1g5916 378 ProSiteProfiles DOG1 domain profile. 149 360 IPR025422 GO:0006351|GO:0043565
Lja1g5916 378 Gene3D - 79 129 - -
Lja1g5916 378 Pfam bZIP transcription factor 80 109 IPR004827 GO:0003700|GO:0006355
Lja1g5916 378 SUPERFAMILY Leucine zipper domain 80 114 IPR046347 GO:0003700|GO:0006355
Lja1g5916 378 PANTHER TRANSCRIPTION FACTOR TGA9 14 366 - -
Lja1g5916 378 MobiDBLite consensus disorder prediction 53 75 - -
Lja1g5916 378 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5916 Lja-Chr1 108195040 108199753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5916 1 364 Calmodulin-binding Proteins AT5G65210 51.902 1.81e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja1g5916 DOG1 9.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5916 K14431 - gmx:100775882 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5916 1 108195040 108199753 Lja1g5916 1 108195040 108199753 ECH
Lja1g5916 1 108195040 108199753 Lja1g5105 1 73603174 73607079 PCT