Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5907 ATGGCAGCATCAGTGGACAACCGTCAATACAGCACCCTTAACGGCGTCGTCCGCTCCTTCACCCCGAACAACACCTACCTCCACGACCCAAAACCCAGCTTCCCCGCCGTGAACCTCGACCTCGACGCTTCCTCCAGTGACGACGACGACAAAAACGACGACGCGTCGATCCTCAAAGACCTCATTAGAAAGGGCAACGCAGAAATCGAATCGTCCGTTCTCGACCCACGTGACCAGGGAACGGCTGATAACTGGATCTCACGAAACTCCTCCATGGTCCGCCTCACAGGGAAGCACCCTTTCAACTCGGAGCCACCACTCCCACGCCTCATGCACCACGGGTTCATAACCCCGGTCCCGCTTCACTATGTTCGCAACCACGGTCCGGTTCCCAAAGCGCGTTGGGATGACTGGACCGTGGAGGTGACCGGGTTGGTGAAAACACCGACCCGGTTTAGTATGGATAGGCTCGTCCGTGATTTCCCGAGCCGCGAGCTTCCTGTGACGCTCGTGTGCGCGGGAAATCGCAGGAAGGAGCAGAACATGGTCCGCCAAAGCATCGGGTTCAACTGGGGATCCGCCGGGGTCTCCACGTCCGTGTGGCGCGGCGTGTCATTGCGCCACATCCTGCGGAGGTGCAGGATCCAGACGCGGTCAAGAGGTGCGCTACACGTGTGCTTCGAGGGGGACGAGGATCTTCCCGGTGGTGGCGGTTCCAAGTACTCGACGAGCATCAGGAGGGAGGTTGCGATGGATCCGTCGCGTGATGTTATACTTGCTTACATGCAGAACGGGGAGGTTCTGGCTCCAGATCATGGATTTCCGGTTCGGGTTATCATACCCGGGTTTATTGGTGGCCGCATGGTGAAGTGGCTTAAACGTATTGTGGTGACGGAAGAAGAGTGTGATGGACATTACCATTACAAGGATAATAGAGTGCTTCCTTCCCATGTTGATGCAGAACTTGCCAATGAAGAAGGATGGTGGTACAAGCCGGAGTATATTATCAACGAGTTGAACATAAATTCCGTGATTACGACGCCGTGTCATGATGAGATCTTGCCCATTAACGCATGGACTACGCAGAGGCCTTACACGCTGAGAGGCTACTCATATTCTGGGGGTGGAAGAAAAGTGACACGTGTGGAAGTGACACTGGACGGTGGAGAAACATGGTTCGTGTGTGCGTTGGACCAGCAAGAGAAACCAAACAAATACGGCAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTAGAAGTGCTGGACCTTCTTGGGACCAAGGAGATTGCTGTCCGCGCATGGGATGAGGCCCTCAACACCCAACCTGAAAACCTCATTTGGAATGTTATGGGCATGATGAACAACTGCTGGTTCAGGGTGAAAACCAATGTGTGCAAGCCCCACAAGGGTGAGATTGGAATAGTGTTCGAACATCCAACCCAACCAGGAAACCAACCAGGCGGGTGGATGGCGAAGGAGAAACACCTAGAGATCTCACAACAAGACTCTCGCCCAATTCTCAAAAAGAGTGTCTCCTCACCATTCATGAACACCGCCACAAAAATGTACTCCCTCTCGGAAGTAAAGAAACACAACAGCCCCGACTCTGCATGGATCATTGTCCACGGTCATGTTTACGACTGCACCCGCTTCCTCAAGGACCACCCTGGCGGTGCTGACAGCATCCTCATCAACGCCGGCACTGACTGCACCGAGGAGTTTGAGGCCATCCACTCTGACAAGGCCAAGAAAATGCTCGAAGACTACCGCGTCGGCGAGCTCATCACCACCGGCTACACCTCAGACTCTTCTTCCCCCAATAACTCCCTCCATGGAAACTCTGAATTCAAACACTTAGCCCCTATCAAAGAAATCACAACAATGTCACTACCACCACTACCACGCCGCAAGGTGGCTCTAATACCACGTGAGAAAATTCCATGCAAACTCATCTCCAGAACCTCAATCTCACACGATGTTAGAGTGTTCCGTTTCGCTCTACCCTCAGAAGATCAACAGTTAGGGCTACCCGTAGGGAAGCACATTTTCTTATGTGCCACCGTTGACGGGAAGCTATGCATGCGAGCCTATACGCCAACTAGCGGAGTTGATGAAGTTGGTTATTTTGAACTCGTGGTTAAAGTTTACTTCAAAGGAGTCCACCCAAAGTTTCCAAATGGCGGTGCCATGTCTCAACATTTGGATTCTCTTCCAATTGGGTCTGATTTGGACGTGAAGGGTCCACTTGGTCACATAGAGTACACTGGAAGAGGAAACTTTTTGGTTCACGGGAAGCATAGATTTGCCAAGAAGCTAGCCATGTTAGCTGGTGGGACTGGAATCACACCGATTTACCAAGTTGCACAAGCGATTCTGAAGGACCCAGAGGATCACACTAAGATGTATGTGGTCTATGCAAACAGGACCGAGGATGATATTCTTTTAAGGGAGGAGCTCGACACATGGGCGAAGAAGTACGAAGACCGGTTCAAGGTGTGGTATGTGGTGGAAACCGCCAAGGAAGGGTGGGGGTACAGTGTGGGATTCGTCACGGAGGGTGTTATGAGGGAGCATCTTCCGGAGGCTGGGGATGATGCATTGGCATTGGCTTGTGGGCCACCACCGATGATTCAGTTTGCCGTAAATCCGAATTTGGAGAAGATGGGATATGATGTCAAGAATGATTTGCTAGTGTTTTGA 2703 0.5213 MAASVDNRQYSTLNGVVRSFTPNNTYLHDPKPSFPAVNLDLDASSSDDDDKNDDASILKDLIRKGNAEIESSVLDPRDQGTADNWISRNSSMVRLTGKHPFNSEPPLPRLMHHGFITPVPLHYVRNHGPVPKARWDDWTVEVTGLVKTPTRFSMDRLVRDFPSRELPVTLVCAGNRRKEQNMVRQSIGFNWGSAGVSTSVWRGVSLRHILRRCRIQTRSRGALHVCFEGDEDLPGGGGSKYSTSIRREVAMDPSRDVILAYMQNGEVLAPDHGFPVRVIIPGFIGGRMVKWLKRIVVTEEECDGHYHYKDNRVLPSHVDAELANEEGWWYKPEYIINELNINSVITTPCHDEILPINAWTTQRPYTLRGYSYSGGGRKVTRVEVTLDGGETWFVCALDQQEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEALNTQPENLIWNVMGMMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNQPGGWMAKEKHLEISQQDSRPILKKSVSSPFMNTATKMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAIHSDKAKKMLEDYRVGELITTGYTSDSSSPNNSLHGNSEFKHLAPIKEITTMSLPPLPRRKVALIPREKIPCKLISRTSISHDVRVFRFALPSEDQQLGLPVGKHIFLCATVDGKLCMRAYTPTSGVDEVGYFELVVKVYFKGVHPKFPNGGAMSQHLDSLPIGSDLDVKGPLGHIEYTGRGNFLVHGKHRFAKKLAMLAGGTGITPIYQVAQAILKDPEDHTKMYVVYANRTEDDILLREELDTWAKKYEDRFKVWYVVETAKEGWGYSVGFVTEGVMREHLPEAGDDALALACGPPPMIQFAVNPNLEKMGYDVKNDLLVF* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5907 900 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 744 894 IPR039261 -
Lja1g5907 900 SUPERFAMILY Riboflavin synthase domain-like 637 756 IPR017938 -
Lja1g5907 900 Gene3D Translation factors 636 750 - -
Lja1g5907 900 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 521 596 IPR001199 -
Lja1g5907 900 Gene3D - 517 598 IPR036400 -
Lja1g5907 900 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 552 559 IPR018506 GO:0020037
Lja1g5907 900 SUPERFAMILY E set domains 338 465 IPR014756 -
Lja1g5907 900 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 520 598 IPR036400 -
Lja1g5907 900 Pfam Cytochrome b5-like Heme/Steroid binding domain 525 595 IPR001199 -
Lja1g5907 900 Pfam Mo-co oxidoreductase dimerisation domain 334 465 IPR005066 GO:0016491|GO:0030151
Lja1g5907 900 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 644 756 IPR017927 GO:0016491
Lja1g5907 900 SMART Cyt_b5_2 524 596 IPR001199 -
Lja1g5907 900 Pfam Oxidoreductase NAD-binding domain 775 881 IPR001433 GO:0016491
Lja1g5907 900 PRINTS Cytochrome B5 signature 556 570 IPR001199 -
Lja1g5907 900 PRINTS Cytochrome B5 signature 546 556 IPR001199 -
Lja1g5907 900 PRINTS Cytochrome B5 signature 571 578 IPR001199 -
Lja1g5907 900 PRINTS Cytochrome B5 signature 583 595 IPR001199 -
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 336 348 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 433 445 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 194 209 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 269 282 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 367 381 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 179 191 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 168 179 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 285 298 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 446 459 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 381 393 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 252 268 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 93 107 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 115 131 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Eukaryotic molybdopterin domain signature 408 418 IPR008335 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 728 737 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 774 793 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 844 860 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 555 565 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 800 809 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 812 823 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 868 876 IPR001709 GO:0016491
Lja1g5907 900 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 696 703 IPR001709 GO:0016491
Lja1g5907 900 Gene3D - 338 511 - -
Lja1g5907 900 PANTHER NITRATE REDUCTASE [NADH] 2 48 900 - -
Lja1g5907 900 CDD eukary_NR_Moco 78 463 - -
Lja1g5907 900 PRINTS Cytochrome B5 reductase signature 675 686 - -
Lja1g5907 900 PRINTS Cytochrome B5 reductase signature 741 755 - -
Lja1g5907 900 PRINTS Cytochrome B5 reductase signature 812 823 - -
Lja1g5907 900 PRINTS Cytochrome B5 reductase signature 696 703 - -
Lja1g5907 900 PRINTS Cytochrome B5 reductase signature 774 793 - -
Lja1g5907 900 PRINTS Cytochrome B5 reductase signature 868 876 - -
Lja1g5907 900 Gene3D - 77 327 IPR036374 -
Lja1g5907 900 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 75 336 IPR036374 -
Lja1g5907 900 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 144 179 IPR022407 GO:0043546
Lja1g5907 900 Pfam Oxidoreductase FAD-binding domain 649 755 IPR008333 -
Lja1g5907 900 CDD cyt_b5_reduct_like 649 895 - -
Lja1g5907 900 Pfam Oxidoreductase molybdopterin binding domain 127 306 IPR000572 -
Lja1g5907 900 PIRSF Nitr_rd_NADH 10 899 IPR012137 GO:0006809|GO:0042128|GO:0050464
Lja1g5907 900 PANTHER NADH-CYTOCHROME B5 REDUCTASE 48 900 IPR001834 GO:0016491
Lja1g5907 900 Gene3D - 751 900 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5907 Lja-Chr1 107901573 107906538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5907 636 891 NADPH P450 reductases AT5G17770 42.636 2.81e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5907 K10534 - gmx:100813471 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5907 1 107901573 107906538 Lja1g5907 1 107901573 107906538 ECH