Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5904 ATGGCGGAGTCTACTCCAAATCCAACTCCTCCTCCGTCAAACGCCACCAACTCCGTCGCCAAATCTTCTTCTTTCCAACGAACGGTTTGCTTATACGACTGGTGGTTGATTCAAGCCAAAAACGACTTCCATGGAAAGCGTTTAGCCGTCGCCGGCGTCTCTTCCAAAAAGGATGAAGCCATGCGGGTGTTTGTTTCGGCTCCTATTATCAAAAGATATGATGTGTTTTCGCTTGAGACCGCGGATGGTGTTTACGTTATCATCAGTGGTTTCATCAACCAGGAGCGCACTCGCGAAAATGGTTTTGCTCCTGAGGTTTTCAACAGTTTTATATTTGGATTTCCTCCAAACTGGGAAAGCTATGCTGTAGATTGCTTCAGGGAAGAATCGACCGCGGCCAGTGATTCAGGCAATGCTGCTCCTGATAATGTATCAGCAATTCGTCCGGAGGTCTTATCTGAAGATGCTGAAAAATCTATTCCTACTTCTTTGGCATCACCAGAAGAGGCCTTAGGAGGTTGCGAGAAGCCATTCCCTGAAGATGAATGCAATGTGTTGACGGAGATTGGTGGGGTTAAAGTTGCTTATGGTAGTGGTGGGAAGAGACGTAGTGCCAGGTTGCATAATATTGAAGATGAATCCAATGTGTCAAAGAAAATAGGTGGCGATAGTGGCAGTAATAGACGTAGTGCCAGGTTGCATAGAGTTGAAGTTTTCCAGCAGAAAAATCAGCCTGCTTCTGATGGTCCTCTGAAGCATCCAGATAAAGAGAAGAGCTCTCCCTCAGTGGCCTTGGAAAATTGTGATGGAAAGAGACTGAAAAGCTCTGCTCGAGGTTGCTTAAGAGAAGAACCAACTGCTGGCATTGATGTGGATGCTGAAAAATCTATTCCTACTTCTTTGGTATCACCAGAAGAAGCCCCAGGAGATTGCGAGCAGCCACTCCCTGAAGATGAATGCAATGTGTTGAGGGAGATTGGTGGGGTTAATGTTGATTATGGTAGTGGCGGGAAGAGACATAGTGCCAGGTTGCATAATATTGAAGATGAATCCCACGTGTCAAAGAAAATAGGTGGCGATAGTGGCGGTAATAGACATAGTGCCAGGTTGCATAGAGTTAAAGTCTTCCAGCAGAAAAATCAGCCTGCTTCTGATGGTCCTCTGAAGCATCCAGGTAAAGAGCAGAGCTCCCCCTCAGTGGCCCTGGAAAATTCTAGTGAAGACGGCCTGAAAAGTTCGGTGACACCCATTAAGTCACAGCCAAAGGGCCTAGTAAACATATTATCTGAGCAGCTTGTTAAAAAATCTTCATCCAGGATTTATAGTTCTATGTCAGCAGAAACTGCAGGCCATTATAAGAAAAGGAGAATGGCTGATATAACAAAAGCGGTCAGTCCTAAGAGAAAAATTACTAAATCTGTGTCTGCTGTGAAATCTCCGCAAGGAAGGGATTTGAGTCACTTGAACAACAGAAGCAACCAGAAAATATCCTGTGTTTCTCCAGAGTCATTGAGTTTAAGAAAATCCAAATCTGGTAGGCTGCTTCTACCTCCCTTAGAGTTCTGGCGCAATCAAATTCCAGTTTATAATGCGGACCGTGAGGTTACAGATATTCAGGAAGGTGCATCTTTGGTATCGCCTTGTAGAGGAGCTTCACCATCATTGAGCCGAAATTTGAGTAACAGGAATACCAAGATGGACCAACAAAACAATATCAATGCTCCAAATGGTTCAGGAGATACGCCTTTGAAGCTCAAACGTGGTCGTCCAAGGAGATAG 1779 0.4486 MAESTPNPTPPPSNATNSVAKSSSFQRTVCLYDWWLIQAKNDFHGKRLAVAGVSSKKDEAMRVFVSAPIIKRYDVFSLETADGVYVIISGFINQERTRENGFAPEVFNSFIFGFPPNWESYAVDCFREESTAASDSGNAAPDNVSAIRPEVLSEDAEKSIPTSLASPEEALGGCEKPFPEDECNVLTEIGGVKVAYGSGGKRRSARLHNIEDESNVSKKIGGDSGSNRRSARLHRVEVFQQKNQPASDGPLKHPDKEKSSPSVALENCDGKRLKSSARGCLREEPTAGIDVDAEKSIPTSLVSPEEAPGDCEQPLPEDECNVLREIGGVNVDYGSGGKRHSARLHNIEDESHVSKKIGGDSGGNRHSARLHRVKVFQQKNQPASDGPLKHPGKEQSSPSVALENSSEDGLKSSVTPIKSQPKGLVNILSEQLVKKSSSRIYSSMSAETAGHYKKRRMADITKAVSPKRKITKSVSAVKSPQGRDLSHLNNRSNQKISCVSPESLSLRKSKSGRLLLPPLEFWRNQIPVYNADREVTDIQEGASLVSPCRGASPSLSRNLSNRNTKMDQQNNINAPNGSGDTPLKLKRGRPRR* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5904 592 MobiDBLite consensus disorder prediction 472 489 - -
Lja1g5904 592 PANTHER MIS18-BINDING PROTEIN 1 7 562 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 397 417 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 200 316 - -
Lja1g5904 592 PANTHER MIS18-BINDING PROTEIN 1 7 562 IPR039110 -
Lja1g5904 592 MobiDBLite consensus disorder prediction 549 578 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 546 592 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 271 290 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 204 218 - -
Lja1g5904 592 Pfam SANTA (SANT Associated) 29 121 IPR015216 -
Lja1g5904 592 MobiDBLite consensus disorder prediction 379 417 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 463 489 - -
Lja1g5904 592 MobiDBLite consensus disorder prediction 343 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5904 Lja-Chr1 107856208 107864392 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g5904 SANTA 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5904 - - lja:Lj0g3v0006579.1 585.104