Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5898 ATGCAATATCAGGTGTTGGGACTTGGGATATTGTCGGTTCCATATGCTCTAGCATCTGGAGGGTGGTTGAGTTTGGCTCTTCTGTTTGCTATTGCTGTTGTAGCCTTTTACGCAGGGTTGTTGATGCAAAGATGTATGGATAAGAATTCAAATATCAAAACATATCCAGATATAGGTGAGCTTGCATTTAGAAAGATAGGAAGACTTGTAGTATCAACATCCATGTACACAGAGCTCTACTTAGTTTCAATAGGCAATTTATTTCCCATTATGGAGATTCAAGTGGCTGGTTTAGCAATTGGTGGAAAGCAATTCTTTGTGGTGGTAGCTGCTTTGGTTATCTTGCCTACAATGTGGTTAGATAACTTGAGTCTAATGTCATATGTATCTGCAAGAGTTGGTTTTCATGAAAAGGGAACTCTCGTTAGTTGGAATGGAATCCCTACAGCTGTTAGCTTGTATTCCTTTTGCTATTGTGCACACCCTGTCTTTCCCACCCTGTACAATTCCATGAGAAAGAAACACCAATTCTCTAATGTTGAATCACAGGTAACATTAAACCTGCCACTGAATAAAATAAGCTCAAAAATAGCAATATATACTACCTTGGTCAATCCCATAACCAAGTATACTTTGATGACAGCACCAATCACCAATGCTTTGAAGGATTTGCTTCCAAGAAAATACAAGAATAGAGTAACCAACATCTTAATAAGCATTATGCTAGTAATCAGCACTGTCATTATTGCTCTTGTAATTCCTTTCTTTGGGTACCTCATGTCCCTAGTTGGAGCAATTTTAAGTGTCACAGCTTCTATTATGCTTCCATGCTTATGCTACTTAAAGATTCTAGGTATATACAGAAATTTTGGGTGTGAGATGTTCACCATAGTGGTGATAATATTGGCAGCTATAGCAATGGGAATATCTGGGACATATACGTCACTACTTGAAATGATCCACCATTTGTAA 972 0.3796 MQYQVLGLGILSVPYALASGGWLSLALLFAIAVVAFYAGLLMQRCMDKNSNIKTYPDIGELAFRKIGRLVVSTSMYTELYLVSIGNLFPIMEIQVAGLAIGGKQFFVVVAALVILPTMWLDNLSLMSYVSARVGFHEKGTLVSWNGIPTAVSLYSFCYCAHPVFPTLYNSMRKKHQFSNVESQVTLNLPLNKISSKIAIYTTLVNPITKYTLMTAPITNALKDLLPRKYKNRVTNILISIMLVISTVIIALVIPFFGYLMSLVGAILSVTASIMLPCLCYLKILGIYRNFGCEMFTIVVIILAAIAMGISGTYTSLLEMIHHL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5898 323 PANTHER OS05G0424000 PROTEIN-RELATED 5 131 - -
Lja1g5898 323 PANTHER OS05G0424000 PROTEIN-RELATED 133 180 - -
Lja1g5898 323 Pfam Transmembrane amino acid transporter protein 5 130 IPR013057 -
Lja1g5898 323 Pfam Transmembrane amino acid transporter protein 178 313 IPR013057 -
Lja1g5898 323 PANTHER OS05G0424000 PROTEIN-RELATED 178 320 - -
Lja1g5898 323 PANTHER AMINO ACID TRANSPORTER AVT1J 5 131 - -
Lja1g5898 323 PANTHER AMINO ACID TRANSPORTER AVT1J 133 180 - -
Lja1g5898 323 PANTHER AMINO ACID TRANSPORTER AVT1J 178 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5898 Lja-Chr1 107672389 107673535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5898 7 320 Amino Acid or Auxin Permease AAAP Family AT3G28960 49.462 2.05e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5898 K15015 - gmx:100794374 472.241