Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5878 ATGGACATGGAGATTGACATTGACGATCTCCTCGACTTCTACGGTCACAGCAGCACCACCCCGAGCTCCGACGACGGCGGTAACTGGGTCCCCTGCTCCCCCCTCGTCGACTGGGACTCCTTCACTGCCGCCGCCGACCATGATGACTTCCACCACATCATCGACTCCTTCATGGACTACACCCTCCCCGCCGGCGACCTCACCCCAGAAGAAGAATCCATTGGAGAAAGATCCGCAACCACCACGGAGGAGGAGGACGATGAAGCCACTGCCGCTGATCACAGTGGAAAGGGCCTCCGCCTTGTGCACCTCCTGATGGCGGCGGCGGAGGCTCTCACCGGTGCTAACAAGAGCCACGACCTGGCTCGAGCGATATTGATTCGGCTCAAGGAGTTGGTGTCCCACACCGCCAACACCAACATGGAGAGACTCGCGGCGTATTTTACCGACGCGCTACAGGGTCTGCTAGATGGCGCCGCGGGTGCGCACAACCTTAACAAAAACAGCGTTGTTGCTGGACCCCACCGTGAGGACCCACAAACGGACATGCTGGCAGCGTTTCAGCTCCTTCAAGACATGTCACCTTACATCAAGTTCGCTCACTTCACAGCCAACCAGGCCATCCTTGAGGCTGTGGCCCACGAACGCAGGGTCCACATTATTGACTTTGATGTTTCCGAAGGGGCCCAATGGGCCTCACTCATTCAGGCCCTATCTTCCCGTAAGGATGGCCCGTCGGGCCCCCACCTCCGCATCACTGCATTGTCCCGGAGCTGTGGACGCGGGGGCGGAAGGAGGTCCATTGCCACTGTGCAGGAGACCGGACGACGGTTGACGGCGTTCGCAGCATCGGTCGGGCAGCCGTTCTCATTTCATCAGTGCAGGTTGGACCCGGATGAAACGTTTCGGACTTCTTCTCTGAAGTTGGTCCGTGGGGAGGCGTTGGTGTTCAACTGCGTACTGCACTTGCCTCATCTTAACTACCGGGCCCCCGATTCCATCGCATCGTTCTTGAGCGGTGCGAGGGAGCTGAGCCCGAAGCTCGTGACATTGGCCGAGGAGGAGGTGGGGCCTGTTGGGGATGCGGGTTTTGTGGGCTTATTCATGGACTCGTTGCACCGTTATTCGGCAATGTGTGATTCGCTTGAGGCCGGGTTTCCAATGCAAAGATGGGCTCGGGGTTTGGTGGAACGTGTGTTTTTGGGCCCACGAATAACAAGCTCGGTGGCCCGGTTGTACCGAACTGGAGAGGAAGATGAGGAGGGAAGTGGGTCATGGGGAGAGTGGTTGGTTGCTTCAGGGTTCAGGGGAGTTCCAATAAGCTTTACTAATCATTGTCAAGCCAAGTTGTTACTTGGTTTGTTTAATGATGGGTATAGGGTGGAGGAATTAAGTAACAATAAGTTGGTGTTGAGTTGGAAATCAAGGCGTTTGCTTTCGGCATCTGTTTGGACTTCTTCAGATGACTCTAATTTGTAG 1479 0.5632 MDMEIDIDDLLDFYGHSSTTPSSDDGGNWVPCSPLVDWDSFTAAADHDDFHHIIDSFMDYTLPAGDLTPEEESIGERSATTTEEEDDEATAADHSGKGLRLVHLLMAAAEALTGANKSHDLARAILIRLKELVSHTANTNMERLAAYFTDALQGLLDGAAGAHNLNKNSVVAGPHREDPQTDMLAAFQLLQDMSPYIKFAHFTANQAILEAVAHERRVHIIDFDVSEGAQWASLIQALSSRKDGPSGPHLRITALSRSCGRGGGRRSIATVQETGRRLTAFAASVGQPFSFHQCRLDPDETFRTSSLKLVRGEALVFNCVLHLPHLNYRAPDSIASFLSGARELSPKLVTLAEEEVGPVGDAGFVGLFMDSLHRYSAMCDSLEAGFPMQRWARGLVERVFLGPRITSSVARLYRTGEEDEEGSGSWGEWLVASGFRGVPISFTNHCQAKLLLGLFNDGYRVEELSNNKLVLSWKSRRLLSASVWTSSDDSNL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5878 492 Pfam GRAS domain family 101 485 IPR005202 -
Lja1g5878 492 PANTHER SCARECROW-LIKE PROTEIN 26 22 485 IPR030028 -
Lja1g5878 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 485 IPR005202 -
Lja1g5878 492 MobiDBLite consensus disorder prediction 65 93 - -
Lja1g5878 492 ProSiteProfiles GRAS family profile. 92 485 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5878 Lja-Chr1 106763307 106764785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5878 61 485 GRAS Transcription Factor Family AT3G54220 36.259 8.75e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g5878 GRAS 4e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5878 - - gmx:100787926 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5878 1 106763307 106764785 Lja1g5878 1 106763307 106764785 ECH