Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5874 ATGCCAATGAACCGTGGCCAAGGCAAACCCAAAAGGTGGTACCAGCTATGCTTTGCTCCCACTAGTGATAGTTCAGATGATTCAGACACAGAATCTGTAGTCCTACCTCCCAATAGTACTATAACTAGTACATGGCAAGAAATTTCTCCACCAGAGTCGACACCGCCACCATCACCACCACTACCACTGCCGCCACCGCCACCACCACCACCAAACTTTGAACTACTACTGCCACCGCCTCCCCCACCACAGTTAAATTTTGAACAACCACTGCGGATGGCAGGGGCACAGCTACGGTTATTTTATCCATCACCAAACTTGGAACTACCACCACCACCATCGCGGCCATCTCCGGGGGCCTGGGATATAGCATTTGACATTGAATCACTGTCTAGTATATCTCCTAGTCCCAGCCGCCAAAGATTTGAGGTTCAAGACAGTGTCATGGTTCAAGACAGTGTCATCAATGCCATTCACAAGGTGAGAATCTCAGAGTTGCATAGGAGAGGTGAAATGTCTCACTGCCCCATTTGCATGGAGGAGGTCAAAGTTGGTGACCAAGCATGTTTATTACCCTGCACACACTTCTACTGTTCTGAATGCATTCTTCAATGGCTTAGGCTTAGCAACAACAAAACCTGTCCCGTTTGCAGGCTTCAGTTGGAGGGTTGGGAAGATCATGGTAATTCTCATAGCATAGATGAAACAGCTTCAGCTTGGGACTTCTTTGGACATCAAAACTTACCACCACCATCACCACCACTAGTAATTGGTGTTGATCAAGATTGGGACTACTTTTTATATTCCTCCCCTGATTCATCAGTAACAGAGAATAATAGTGCTGGTAGAAACTCGGATGAAGCTGATCATTATGATAGTGCATGTGAGGAGCTAGGTGACAATAGTTTGGACCTTGGACCTGAAAACTCATCACCGCCACCACCACCACCAGTAATCCCTCGTCATGCAAGTTCATTCAGCTGGGAAAACTTTTATCCATCCTCTCCGGAATCGGATACAGCAGCTACATAG 1032 0.469 MPMNRGQGKPKRWYQLCFAPTSDSSDDSDTESVVLPPNSTITSTWQEISPPESTPPPSPPLPLPPPPPPPPNFELLLPPPPPPQLNFEQPLRMAGAQLRLFYPSPNLELPPPPSRPSPGAWDIAFDIESLSSISPSPSRQRFEVQDSVMVQDSVINAIHKVRISELHRRGEMSHCPICMEEVKVGDQACLLPCTHFYCSECILQWLRLSNNKTCPVCRLQLEGWEDHGNSHSIDETASAWDFFGHQNLPPPSPPLVIGVDQDWDYFLYSSPDSSVTENNSAGRNSDEADHYDSACEELGDNSLDLGPENSSPPPPPPVIPRHASSFSWENFYPSSPESDTAAT* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5874 343 MobiDBLite consensus disorder prediction 50 87 - -
Lja1g5874 343 Pfam Ring finger domain 174 218 IPR001841 -
Lja1g5874 343 SMART ring_2 175 217 IPR001841 -
Lja1g5874 343 MobiDBLite consensus disorder prediction 18 87 - -
Lja1g5874 343 SUPERFAMILY RING/U-box 154 221 - -
Lja1g5874 343 ProSiteProfiles Zinc finger RING-type profile. 175 218 IPR001841 -
Lja1g5874 343 MobiDBLite consensus disorder prediction 283 297 - -
Lja1g5874 343 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 149 238 - -
Lja1g5874 343 ProSitePatterns Zinc finger RING-type signature. 193 202 IPR017907 -
Lja1g5874 343 MobiDBLite consensus disorder prediction 18 49 - -
Lja1g5874 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 223 IPR013083 -
Lja1g5874 343 MobiDBLite consensus disorder prediction 273 324 - -
Lja1g5874 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 149 238 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5874 106 238 C3H Transcription Factor Family AT1G68180 32.484 1.20e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5874 K11982 - ccaj:109817940 184.496