Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5869 ATGGTGAAGGCAGAGATCAAGATCGACACAGAGCCATCAGCAAAGGCAATGCAGGCTTTGTCTCCAACATCATCCTCATCATCATCAGCAATGTCCAATGAGAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGAACCTGGGGCTCATGGGTTTCAGAGATCAGAGCACCAAACCAGAAAACAAGGATATGGTTGGGTTCTTATTCAACTGCAGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTCTGCCTCAAAGGGTCTTCTGCCACCAATCTGAACTTCCCTTCAAGTGCTTCACATTTCATTCCTCCTCAAGACACTGCCATGAATCCTAAATCAATTCAAAGATTTGCTGCTGCTGCTGCAAATAACAGTTTTGTGGACAATGGTTCACCTTCTCCTCCTCCTCAACCTCCTTCAAATTCTTCCTCATTGGTCTCATCCCCATCAATGTCATCATCTCCTTCAGATCAAATAGATGATGATGTCTCACTCTTTTCTTCCATTGGGGCCAACAACACTGGCTCTGAATATCAAGCAAATAATGAATCAATGGCTATGATTCAGTCTTGGTCTTGGTATGGCTTTGATGACATTCAATTCCCAAAACATGGGGATCAAATGCTGAGTGGGGATGTGTTTGACATTGATGCAGCCCAGGCACTTGATGATTGGTACTATGAGGAAAGTGACATTCGTTTGTGGAGCTTCTCCTAA 720 0.4417 MVKAEIKIDTEPSAKAMQALSPTSSSSSSAMSNEKKKKYKGVRMRTWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPSSASHFIPPQDTAMNPKSIQRFAAAAANNSFVDNGSPSPPPQPPSNSSSLVSSPSMSSSPSDQIDDDVSLFSSIGANNTGSEYQANNESMAMIQSWSWYGFDDIQFPKHGDQMLSGDVFDIDAAQALDDWYYEESDIRLWSFS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5869 239 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700|GO:0006355
Lja1g5869 239 MobiDBLite consensus disorder prediction 16 32 - -
Lja1g5869 239 SMART rav1_2 38 102 IPR001471 GO:0003700|GO:0006355
Lja1g5869 239 Gene3D AP2/ERF domain 37 97 IPR036955 GO:0003700|GO:0006355
Lja1g5869 239 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Lja1g5869 239 MobiDBLite consensus disorder prediction 1 38 - -
Lja1g5869 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 14 239 - -
Lja1g5869 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 239 - -
Lja1g5869 239 MobiDBLite consensus disorder prediction 126 159 - -
Lja1g5869 239 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Lja1g5869 239 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Lja1g5869 239 CDD AP2 37 98 IPR001471 GO:0003700|GO:0006355
Lja1g5869 239 MobiDBLite consensus disorder prediction 144 159 - -
Lja1g5869 239 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5869 Lja-Chr1 105647297 105648406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5869 1 238 AP2-EREBP Transcription Factor Family AT1G21910 43.866 2.52e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g5869 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5869 - - mtr:MTR_5g058470 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5869 1 105647297 105648406 Lja1g5869 1 105647297 105648406 ECH