Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5862 ATGGGTGTGACAACGTGTTGTGACAAGGTGCATTCATGGTTCCGCGATTCAAAAGCGCTTTTGATAATCATAAGCCTGCAATTTGGCTCTGCTGGGATGTATGTTATCACCAAGGATGCTCTTAACAAAGGAATGAGTCATTATGTGTTTGTTGTTTACCGTAATATCATCGCCACTATAGTTCTTGGTCCCTTCGCATTTTTTCTTGAAAGGAAAACAAGGCCCAAGATGACAATTCGGATATTTTCAGAAATTATGGCTGTGGCTTTTGTCGAGATAATACTTGATCAGTGCTTCACCTTCCTTGGGATGAAGATGACATCAGCCTCTTTTGCATCAGCCGTGATGAATTCCGTACCATCCATCACCTTTGTACTCGCAATCATTTTTCGATTGGAGCGCATGAAGTTGAAGGAGTTAGGATGCCAAGCCAAAGTGTTTGGCACTGTGGTGAGTCTTGGAGGAGCATTTCTAATGGCACTCTACAAAGGTCCAGTTGTTGGATCATCAGCGAGCCACGTTGCTCAATCTCAGAATGTGAGCAACTCGAGTGGCGATCAGTGGCTCATTGGTGCATGTTTCCTCCTCATAGGTTGTGCTGGCTTCTCTGCTTTCTACATCTTGCAAGCCATAACATTGAGAAAGTATCCAGCAGAGATGTCTCTAGCAACATGGATTTGCTTTGTGGGTGCACTTCAAAGCAGTGCATTAACAATTTTCATGGAACACCATGACCCTGCAGCATGGTCACTAGGATTGGATTCTAAGCTTTTTGCTTGTGCATACTCGGGTATAGTAACTTCAGCAGTCCAATTTTACGTGCAAGGCACTGTTATTAAAACAAAAGGCCCAGTCTTCGTCACTGCTTTCAATCCCCTGCGTATGATCATAGTCACAGCCTTGGCCTGCATCCTCCTCTCAGAGAAACTCTACCTTGGAAGCCTTATTGGCGGAGTAGTTGTGGTTATGGGGCTTTATCTAGTTGTGTGGGGCAAAGCTAAAGAACAGAAAAATTTGATACCACCTTGCCCTGAAAAGGAGATATCACAGCAGCTGCCAGTTATTGCCCCAAAAATTGAGAACAATGAAAATAAAGCACAAGTGGTCATAAATAGAGCTGGAACCATTGATGTGGAAGCCAGAGGTTCATCAAGTACAGAGAGTAATTGA 1170 0.4376 MGVTTCCDKVHSWFRDSKALLIIISLQFGSAGMYVITKDALNKGMSHYVFVVYRNIIATIVLGPFAFFLERKTRPKMTIRIFSEIMAVAFVEIILDQCFTFLGMKMTSASFASAVMNSVPSITFVLAIIFRLERMKLKELGCQAKVFGTVVSLGGAFLMALYKGPVVGSSASHVAQSQNVSNSSGDQWLIGACFLLIGCAGFSAFYILQAITLRKYPAEMSLATWICFVGALQSSALTIFMEHHDPAAWSLGLDSKLFACAYSGIVTSAVQFYVQGTVIKTKGPVFVTAFNPLRMIIVTALACILLSEKLYLGSLIGGVVVVMGLYLVVWGKAKEQKNLIPPCPEKEISQQLPVIAPKIENNENKAQVVINRAGTIDVEARGSSSTESN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5862 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 334 - -
Lja1g5862 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 162 - -
Lja1g5862 389 PANTHER WAT1-RELATED PROTEIN 16 351 IPR030184 GO:0016021|GO:0022857
Lja1g5862 389 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020|GO:0016021
Lja1g5862 389 Pfam EamA-like transporter family 20 160 IPR000620 GO:0016020|GO:0016021
Lja1g5862 389 PANTHER WAT1-RELATED PROTEIN 16 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5862 Lja-Chr1 105315949 105319608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5862 18 375 Nodulin-like Gene Family AT2G39510 44.293 1.08e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5862 - - gmx:100813852 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5862 1 105315949 105319608 Lja1g5862 1 105315949 105319608 ECH