Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5861 ATGACGAGTGAAAATGGGTTCACAAAGGTGTTTCAGAAGTTTAAGCCTTACCTTGCTATGGTGTCCCTTCAGTTTGGTTATGCTGGAATGTACATCATCACCATGGTTTCATTCAAACATGGAATGAGCCATTGGGTGCTCTCTGTGTACCGACATATCATTGCCTTTTGCTTCATGGCTCCTTTTGCTCTTGTCCTAGAAAGAAAAATACGGCCAAAGATGACTCTCCCTGTGTTCCTGAGATTGGTGGTGCTAGGCTTCCTTGAGCCAGTGCTTGATCAAAACTTGTACAACATGGGGATGAAGAACACTTCAACAACTTTTGCATCGGCCACCATTAATGTCCTCCCAGCCATTACTTTTGTATTGGCACTCATTTTCAGGTTAGAGACAGTGAATTTCAAGAAAATTCACAGCGTGGCCAAGGTGATTGGAACAGTAGTAACAGTATCAGGAGCCATGGTTATGACTTTGTACAAAGGCCCTGCTTTCCAGATCGTGAAGGGAGAAGGAGGAAGCGGCCATGACAGTAGCAGCGGTGAGCCCTCAGAACAGAACTGGCTGCTCGGAACAGTAATGCTCATCGGAAGTTGCGGTGGTTGGGCTAGCTTCTTCATCTTGCAATCCTTCACTTTGAAGATGTACCCAGCAGAGCTCACAGTAACAGCCTGGATTTGCTTTTTGGGTATTATTGAGTGTTCAATTGCATCGCTTATATTTGAACGTGACATGAGCGTGTGGTCCTTAGGCTTCGACTCCAGGCTTCTTGCTTGTGTTTATTCTGGGGTGGTGTGCTCTGGAATGGCCTACTATGTACAAGGAGTTGTCACAAGGGAACGTGGCCCTGTGTTTGTTACTTCCTTCAGCCCTCTATGTATGATTATCACAGCTGCATTGGGTTCCCTTGTCTTGGCTGAGCAAATTCATCTTGGAAGTATAATTGGAGCTATTATCATTGTGTGTGGACTTTACACTGTGGTATGGGGGAAAAGCAAAGACAGTGTGAACACAACTGGAGCAGGAAGCGATGAGGGCCAAGCATTGCCAATAAAAGACAGTGCAAAATCAGGATCATACGTTTTTGAAAGTATTGGAGTGAATGTTCCTGGAACAAGATCATAG 1122 0.451 MTSENGFTKVFQKFKPYLAMVSLQFGYAGMYIITMVSFKHGMSHWVLSVYRHIIAFCFMAPFALVLERKIRPKMTLPVFLRLVVLGFLEPVLDQNLYNMGMKNTSTTFASATINVLPAITFVLALIFRLETVNFKKIHSVAKVIGTVVTVSGAMVMTLYKGPAFQIVKGEGGSGHDSSSGEPSEQNWLLGTVMLIGSCGGWASFFILQSFTLKMYPAELTVTAWICFLGIIECSIASLIFERDMSVWSLGFDSRLLACVYSGVVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSLVLAEQIHLGSIIGAIIIVCGLYTVVWGKSKDSVNTTGAGSDEGQALPIKDSAKSGSYVFESIGVNVPGTRS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5861 373 PANTHER WAT1-RELATED PROTEIN 11 353 IPR030184 GO:0016021|GO:0022857
Lja1g5861 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 331 - -
Lja1g5861 373 PANTHER WAT1-RELATED PROTEIN 11 353 - -
Lja1g5861 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Lja1g5861 373 Pfam EamA-like transporter family 28 150 IPR000620 GO:0016020|GO:0016021
Lja1g5861 373 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5861 Lja-Chr1 105204744 105210115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5861 12 356 Nodulin-like Gene Family AT1G44800 65.318 1.64e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5861 - - gmx:100814921 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5861 1 105204744 105210115 Lja1g5861 1 105204744 105210115 ECH