Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5854 ATGGCTCACAATCATCACATCACCACCGATTCTCCTCTCTCTCGTCGCATAGTTCGTTCCTTCCTTCACTTCCTCAACCAAGTTGAACCATGCCCTGGGGTTGATGCTGAAGGTATTGAGGTTGCTAAGGAGTGTTTGGCTGAGGCCTTTAAGGTTAACTCATCTCATGTAGCTGGTGATCCTGATTCATTGATTGACATTTTCAAGTCACTTGAAGCAAACAAGCAATGTGAAGCTAGTAAGTCCGACGTTGGTCCTCGGCCAGATTCTGTTGAAGCTTCCGGTGCATTTCCTGCCCAGGATCATCCTGATCATGCTAAAAATCACTCTGAGGCATCAAAATCTGTGAATGAAGATCGGACACAGGGCCCTCTCACTTCAGCAATGACTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTCAGGACCAATATTGATGGGAGTGATGACCCTGTGCAACTGGAGAAAGCATCCCGTTTATTTGATGATGCTTTTATGGAGATGGAAAGATCTGGATGTCAGCAATTTAGTTTGAAGAATTTGGCTGAATCACTTAAATCACTAGGCAATAAGGCAATGCAATCCAATCTATATTCTGATGCAATTGAGTTGTATAATTGTGCAATTGCGCTTTATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCATACACTCACATCAGAAAATATACAGAAGCGATCCAGGATTGTCTTAGATCTATTGAGATTGATCCAAACTACTGCAAGGCATACAGCCGTCTCGGTTTAGCTTATCATGCCCAAGGAAATTATAGAGATGCTATTGATATATTTAGAAAAGCCTTGCAGTTGGATCCAAATAATGGGTTTGTCAAAGAGAATATGAAGGCAGCTGTGGCAAAATTGTTAGATGAGCAGCAACATGGAGATCCCAATCAGTATCCAAGATCATCTGAAGAATTCCAAAACCAGTCTGCACGGGGACCAAGAAGCCACGGAGTGCCGCCTCCGTTTACCTCAATGCCATTTAACCCTAATAATCTTGCAAGTATGTTCATGAACATGGCGCCAAATGCCACAAATGCACATCAGGGGCCACATCCTCAAGAAAGGGAAGATGCCAACACTAGTGGTGCTGATGAACCAGAAATAAGAGCTGGGAGCAGCAATTTTAGTATGAACTTTGAGCAAATTCCTCAGGATCTATCAGGGGCCTTCCAATCTATGATGGAAATGTTTTCTGGGTCTGTACCCCCTGGGCAACCACATGATCAAACGAATGGAAGAACAGCGCCAAACTAA 1308 0.4335 MAHNHHITTDSPLSRRIVRSFLHFLNQVEPCPGVDAEGIEVAKECLAEAFKVNSSHVAGDPDSLIDIFKSLEANKQCEASKSDVGPRPDSVEASGAFPAQDHPDHAKNHSEASKSVNEDRTQGPLTSAMTKDELCGQFFAALEKNHYFRTNIDGSDDPVQLEKASRLFDDAFMEMERSGCQQFSLKNLAESLKSLGNKAMQSNLYSDAIELYNCAIALYEKSAVYYCNRAAAYTHIRKYTEAIQDCLRSIEIDPNYCKAYSRLGLAYHAQGNYRDAIDIFRKALQLDPNNGFVKENMKAAVAKLLDEQQHGDPNQYPRSSEEFQNQSARGPRSHGVPPPFTSMPFNPNNLASMFMNMAPNATNAHQGPHPQEREDANTSGADEPEIRAGSSNFSMNFEQIPQDLSGAFQSMMEMFSGSVPPGQPHDQTNGRTAPN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5854 435 MobiDBLite consensus disorder prediction 309 347 - -
Lja1g5854 435 MobiDBLite consensus disorder prediction 414 435 - -
Lja1g5854 435 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Lja1g5854 435 PANTHER LD24721P 10 432 - -
Lja1g5854 435 SUPERFAMILY TPR-like 188 300 IPR011990 GO:0005515
Lja1g5854 435 SMART tpr_5 223 256 IPR019734 GO:0005515
Lja1g5854 435 SMART tpr_5 189 222 IPR019734 GO:0005515
Lja1g5854 435 SMART tpr_5 257 290 IPR019734 GO:0005515
Lja1g5854 435 MobiDBLite consensus disorder prediction 77 124 - -
Lja1g5854 435 PANTHER LD24721P 10 432 - -
Lja1g5854 435 MobiDBLite consensus disorder prediction 312 331 - -
Lja1g5854 435 ProSiteProfiles TPR repeat profile. 257 290 IPR019734 GO:0005515
Lja1g5854 435 Gene3D Immunoglobulin FC, subunit C 1 74 - -
Lja1g5854 435 Pfam Homodimerisation domain of SGTA 15 65 IPR032374 -
Lja1g5854 435 MobiDBLite consensus disorder prediction 360 389 - -
Lja1g5854 435 MobiDBLite consensus disorder prediction 421 435 - -
Lja1g5854 435 MobiDBLite consensus disorder prediction 102 116 - -
Lja1g5854 435 Gene3D Tetratricopeptide repeat domain 184 341 IPR011990 GO:0005515
Lja1g5854 435 Pfam Tetratricopeptide repeat 258 290 IPR001440 GO:0005515
Lja1g5854 435 Pfam Tetratricopeptide repeat 223 256 IPR001440 GO:0005515
Lja1g5854 435 ProSiteProfiles TPR repeat region circular profile. 257 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5854 Lja-Chr1 105103036 105113640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5854 188 295 U-box Gene Family AT3G07370 30.357 5.60e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5854 K16365 - gmx:100799770 608.986