Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5843 ATGGTGGTGGGTACGGCGAATATTCCATCATGGTTACAAGCTTTGCTTGATGCTTTCAGAATAAGAGAGCCATTGGCACATTCTCCCAACTGCACTTGGAGCAAGAAATTCTTTACCGTCTTCTGCATTGACTGCTTGAAATTAGTTTGCAAGTTCTGTCAACACCACCAGCATAAAGAACACCAAGTACTTCCATTGTACCAAGCATCAGGTCAAGATGGTTTCAAGGTGAACGAGCTGTGCAAGCTGATAGATATTGAGGATATACAACTATATACAATCAATGCAATGCAAATAGTTTATGTCAACAAGAGAAATAATAAGGATTCTAAGTCCCGTAATAACAAAACTGGCAAAGAAGATGCCCCCAAGTGTGAAGTATGTGGCTGGGAACTCATAAAAGTTGGTAACAAGTTCTGTTCAATTGAATGCAAAGCTGCGAGTGGCCGAAATCTCTCCTTGAAATCTGATCAGTCTGTTTATCAAGTTAATTCAGTTTCTGTTGATCAAGTTTCTGATGATCTAGTTGAATCATGTAGGAAAAGGCAAAGAAAAGGGATGCCCACAAGAGCTCCTTTCTTTTAG 585 0.3983 MVVGTANIPSWLQALLDAFRIREPLAHSPNCTWSKKFFTVFCIDCLKLVCKFCQHHQHKEHQVLPLYQASGQDGFKVNELCKLIDIEDIQLYTINAMQIVYVNKRNNKDSKSRNNKTGKEDAPKCEVCGWELIKVGNKFCSIECKAASGRNLSLKSDQSVYQVNSVSVDQVSDDLVESCRKRQRKGMPTRAPFF* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5843 194 Pfam PLATZ transcription factor 70 145 IPR006734 -
Lja1g5843 194 Gene3D Classic Zinc Finger 20 85 - -
Lja1g5843 194 PANTHER - 7 194 - -
Lja1g5843 194 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 194 - -
Lja1g5843 194 ProSiteProfiles Zinc finger B-box type profile. 31 66 IPR000315 GO:0008270
Lja1g5843 194 SUPERFAMILY B-box zinc-binding domain 29 74 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lja1g5843 PLATZ 7.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5843 - - lja:Lj0g3v0163639.1 166.392