Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5841 ATGGCGGATTCCAAGGTCGAAACCATTTCCCGTTTAGCTCAATGGAGAATCGAGAATTTCGGACCCTGTTCCTACAAGAAATCCGAACCTTTCAAGCTCGGAATTTGGAACTGGTACATGTCCATAGAGAGAAACAGGTACCTGTATATCCATATTTTCCCAGAGCCTTCAAAGCTTTCTAAGGAGCAACCACCTGTGGCTCGTTTCATTCTTCGTGTCTCCAGCACTGGCTCCACCCGTAGATTTTATATTTCTCCTGTTCATGAAAGGGTGCTTAGAACAAGTGAGGACTTTGTCTGGCCTGTGGATACAACATTCCTTGGTCGCTTCATCATTGATGTTGAATTTCTTGACCTGAAAATCTACCCTACGAGTGGTGGAGTAGCCGGTTCCATATGGCCATCTGACGGAAAACTGCAATCTGTTGCATCTCAAAGCGCTCTCCGATGCCTCTCCCGCATGCTTGACGAGGAAATACACGCTGACCTCACCATTGTCACCGCAGATGGTACACTGAGAGCCCATAAGGCAGTTTTGTCTGCAAGCTCCCCTGTGTTTGAGGGCTTGTATCATCATCAAGACGTCGTTGATGATGAAAAAGAGACCTCTACAATCCACATGGAAGACATGTCACAACAATCCTGCAAGGCCCTTCTGAGCTACTTGTACGGCACAATAAAACATGAAGATTTCTGGAAGCACAGGCTTGCGTTGCTCGGAGCAGCCAATAAATTCGAAATTGGTGATCTCAAAGATGCTTGTGAGGAAAGCCTGCTGGATGATCTTACCTCAGGAAATGTTCTCAGCAGGCTAAATGAGGCTTGGCTGTACCAGTTGCCCAAGTTAAAGAAAGGATGTTTCACATTCTTATTTGACTTTGGCAAGATATATGATGTTAGAGAGGAAATAAACAACTTTTTTCTCCTTGCGGAGAGGGAGCTGATGATGGAGATGTTTCAGGAAGTGCTTACTGTTTGGAAATAG 984 0.4533 MADSKVETISRLAQWRIENFGPCSYKKSEPFKLGIWNWYMSIERNRYLYIHIFPEPSKLSKEQPPVARFILRVSSTGSTRRFYISPVHERVLRTSEDFVWPVDTTFLGRFIIDVEFLDLKIYPTSGGVAGSIWPSDGKLQSVASQSALRCLSRMLDEEIHADLTIVTADGTLRAHKAVLSASSPVFEGLYHHQDVVDDEKETSTIHMEDMSQQSCKALLSYLYGTIKHEDFWKHRLALLGAANKFEIGDLKDACEESLLDDLTSGNVLSRLNEAWLYQLPKLKKGCFTFLFDFGKIYDVREEINNFFLLAERELMMEMFQEVLTVWK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5841 327 Pfam BTB/POZ domain 153 259 IPR000210 GO:0005515
Lja1g5841 327 PANTHER OS08G0103600 PROTEIN 1 327 - -
Lja1g5841 327 SUPERFAMILY POZ domain 143 260 IPR011333 -
Lja1g5841 327 Gene3D Potassium Channel Kv1.1; Chain A 135 291 IPR011333 -
Lja1g5841 327 SMART BTB_4 161 262 IPR000210 GO:0005515
Lja1g5841 327 ProSiteProfiles BTB domain profile. 161 223 IPR000210 GO:0005515
Lja1g5841 327 PANTHER OS08G0495500 PROTEIN-RELATED 1 327 IPR044714 -
Lja1g5841 327 CDD BTB_POZ_ZBTB_KLHL-like 160 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5841 Lja-Chr1 104926653 104929942 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g5841 BTB 3.8e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5841 K10523 - gmx:100775687 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5841 1 104926653 104929942 Lja1g5841 1 104926653 104929942 ECH